General information for g17171.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Lipase member H-A.
Parent gene
- The parent gene g17171 is located on chr_4: 12706004..12707518 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17171 | g17171.t1 | isoform | g17171.t1 | 12706004 | 12707518 |
| chr_4 | g17171 | g17171.t1 | exon | g17171.t1.exon1 | 12706004 | 12706063 |
| chr_4 | g17171 | g17171.t1 | cds | g17171.t1.CDS1 | 12706004 | 12706063 |
| chr_4 | g17171 | g17171.t1 | exon | g17171.t1.exon2 | 12706139 | 12706423 |
| chr_4 | g17171 | g17171.t1 | cds | g17171.t1.CDS2 | 12706139 | 12706423 |
| chr_4 | g17171 | g17171.t1 | exon | g17171.t1.exon3 | 12706601 | 12706775 |
| chr_4 | g17171 | g17171.t1 | cds | g17171.t1.CDS3 | 12706601 | 12706775 |
| chr_4 | g17171 | g17171.t1 | exon | g17171.t1.exon4 | 12706834 | 12706909 |
| chr_4 | g17171 | g17171.t1 | cds | g17171.t1.CDS4 | 12706834 | 12706909 |
| chr_4 | g17171 | g17171.t1 | exon | g17171.t1.exon5 | 12706976 | 12707109 |
| chr_4 | g17171 | g17171.t1 | cds | g17171.t1.CDS5 | 12706976 | 12707109 |
| chr_4 | g17171 | g17171.t1 | exon | g17171.t1.exon6 | 12707289 | 12707518 |
| chr_4 | g17171 | g17171.t1 | cds | g17171.t1.CDS6 | 12707289 | 12707518 |
| chr_4 | g17171 | g17171.t1 | TSS | g17171.t1 | NA | NA |
| chr_4 | g17171 | g17171.t1 | TTS | g17171.t1 | NA | NA |
Sequences
>g17171.t1 Gene=g17171 Length=960
ATGAAAAGTTTAAAATTTTTATTAATTTTTATTTCTTCAACATTTTTTGTTGATGCTAAA
ATTGATGGAGGAATTTTTTTCAATTTTTATGGCTCCACATATGATGACTATAAAAATACA
ACTTTAAATTTCAATTTTACTAGTCTTATCAATACAAAATATTATAATAGCAGTAAACCA
ACAGTTTTTTATGTTCATGGATGGAGAAGTGGTTTGACAATCATAAGCACAGAAAGTGTT
GTTAAAGCTTATTTATCAAGAGGTGATCACAACATTATTGCAGTTGATTGGAGCAAATAT
TCAAGTAATGTCGATTATATTGAAGTTGCTGCTTCTGTTAAAGACCAAGCAACTTTCAAC
ACAGCAGTTTTAGGACAAATGCAAACAGCTGGATTTAATTTATCGACTTTTCATTTTGTC
GGTCATAGTTTAGGTGCACAAATTTTAGGACGTGTTGGTTATCAATTTATCAATAATTAT
AGCTTTAAATTCAAAAGAATCACTGGACTTGATCCTGCTGGGCCACTTTTTGCTAATAGA
AATGATGACAAACTCTTTCAACTCGAATATCCAACATTGAACAAATTAAATGCAGAATTT
GTTGACATAATTCATACCGATGCTGGTACATTTGGATCAAAATTTACAACAGGTCATATC
GACTTTCGTCCAAATGGTGGAAGCTCTCAACCTGGTTGTTCTTTATTTGAATGCTTTTTT
ATTGGTCAAGACGACTGTCTATCATGTGATCATGGTCGTGCATGGAAATATTATGCTGAA
TCTGTTAACATCACAACATCAACTTTTATTGCTAAAAGATGTCCTAATAATGTCACAGAT
TTCACTAAATCAAAATGCATTGGACCAGAAACAGCATCAATGGGTTTCAATGCTGATAAA
TACAAAGTTGGTGGAAATTATTACCTTGAAACTAATGACAGAAAACTATACTCAAAATGA
>g17171.t1 Gene=g17171 Length=319
MKSLKFLLIFISSTFFVDAKIDGGIFFNFYGSTYDDYKNTTLNFNFTSLINTKYYNSSKP
TVFYVHGWRSGLTIISTESVVKAYLSRGDHNIIAVDWSKYSSNVDYIEVAASVKDQATFN
TAVLGQMQTAGFNLSTFHFVGHSLGAQILGRVGYQFINNYSFKFKRITGLDPAGPLFANR
NDDKLFQLEYPTLNKLNAEFVDIIHTDAGTFGSKFTTGHIDFRPNGGSSQPGCSLFECFF
IGQDDCLSCDHGRAWKYYAESVNITTSTFIAKRCPNNVTDFTKSKCIGPETASMGFNADK
YKVGGNYYLETNDRKLYSK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g17171.t1 | Coils | Coil | Coil | 314 | 319 | - |
| 8 | g17171.t1 | Gene3D | G3DSA:3.40.50.1820 | - | 13 | 319 | 7.7E-77 |
| 2 | g17171.t1 | PANTHER | PTHR11610 | LIPASE | 37 | 317 | 3.3E-71 |
| 5 | g17171.t1 | PRINTS | PR00821 | Triacylglycerol lipase family signature | 49 | 68 | 7.5E-10 |
| 4 | g17171.t1 | PRINTS | PR00821 | Triacylglycerol lipase family signature | 136 | 154 | 7.5E-10 |
| 3 | g17171.t1 | PRINTS | PR00821 | Triacylglycerol lipase family signature | 249 | 264 | 7.5E-10 |
| 1 | g17171.t1 | Pfam | PF00151 | Lipase | 40 | 315 | 2.5E-47 |
| 11 | g17171.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 19 | - |
| 12 | g17171.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 5 | - |
| 13 | g17171.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 6 | 15 | - |
| 14 | g17171.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 16 | 19 | - |
| 10 | g17171.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 20 | 319 | - |
| 6 | g17171.t1 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 28 | 315 | 5.08E-53 |
| 7 | g17171.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 19 | - |
| 15 | g17171.t1 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 19 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004806 | triglyceride lipase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed