General information for g17178.t31
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Trehalase.
Parent gene
- The parent gene g17178 is located on chr_4: 12745227..12745915 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17178 | g17178.t31 | TTS | g17178.t31 | 12730331 | 12730331 |
| chr_4 | g17178 | g17178.t31 | isoform | g17178.t31 | 12731296 | 12732649 |
| chr_4 | g17178 | g17178.t31 | exon | g17178.t31.exon1 | 12731296 | 12731830 |
| chr_4 | g17178 | g17178.t31 | cds | g17178.t31.CDS1 | 12731297 | 12731830 |
| chr_4 | g17178 | g17178.t31 | exon | g17178.t31.exon2 | 12732419 | 12732649 |
| chr_4 | g17178 | g17178.t31 | cds | g17178.t31.CDS2 | 12732419 | 12732568 |
| chr_4 | g17178 | g17178.t31 | TSS | g17178.t31 | NA | NA |
Sequences
>g17178.t31 Gene=g17178 Length=766
TTTATAGATAAAATAAGTGATAAAAACTTCCGTGATTTTGCAAGTGAATTAAATGGAATT
TGGTTAGAATTGGGAAGAAAAATGAAGCCAGATGTAAAAATTAATGAAGATCACTATTCA
ATAATTCATGTCGATAATCCAGTAATTGTGCCAGGTGGAAGATTTAGAGAATTCTATTAT
TGGGATTCTTATTGGGTCATTCGAGGTTTACTGCTGTGTGAAATGTACAATACAACAAAA
GGAATGCTTGAAAATTTCATGTCAATAGTAACACGTTACGGTTTTATTCCAAATGGTGGC
AGAATATATTATTCGTTACGTTCTCAGCCGCCACTTCTTGCACCAATGGTCAAAACTTAT
GTTGAAACCACAAATGATATTGATTTTGCTGTAAAATATGTTGATGTACTTGCATTAGAA
TTTAATTATTGGTTGGCAAATCACACAGTACAAGTTAAAGGACACACATTAGCAAGATAT
GGTGATAAATCAAATGGACCAAGACCAGAAAGTTATAGAGAAGATATAGAAACAGGAAGT
GGTTTTCAAAGTGCAAAGGACAAAGAAGAACATTATGCAGAATTGAAAGCAGCTGCTGAA
AGTGGAATGGACTTTTCATCGCGATGGTTTATCAATGATGAAGGCACAAATGTTGGAACA
CTTGAGAATTTAAAGACAAGATATATCATACCAGTTGAATTAAATGCTATTTTATATTGG
AATGCCGTCATTATTGCTGAATTTTATGCTATTGCTGGCAATGAAA
>g17178.t31 Gene=g17178 Length=228
MKPDVKINEDHYSIIHVDNPVIVPGGRFREFYYWDSYWVIRGLLLCEMYNTTKGMLENFM
SIVTRYGFIPNGGRIYYSLRSQPPLLAPMVKTYVETTNDIDFAVKYVDVLALEFNYWLAN
HTVQVKGHTLARYGDKSNGPRPESYREDIETGSGFQSAKDKEEHYAELKAAAESGMDFSS
RWFINDEGTNVGTLENLKTRYIIPVELNAILYWNAVIIAEFYAIAGNE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g17178.t31 | Gene3D | G3DSA:1.50.10.10 | - | 1 | 228 | 8.0E-91 |
| 2 | g17178.t31 | PANTHER | PTHR23403 | TREHALASE | 1 | 227 | 2.1E-96 |
| 3 | g17178.t31 | PANTHER | PTHR23403:SF1 | TREHALASE | 1 | 227 | 2.1E-96 |
| 7 | g17178.t31 | PRINTS | PR00744 | Glycosyl hydrolase family 37 signature | 66 | 84 | 4.4E-28 |
| 5 | g17178.t31 | PRINTS | PR00744 | Glycosyl hydrolase family 37 signature | 130 | 147 | 4.4E-28 |
| 6 | g17178.t31 | PRINTS | PR00744 | Glycosyl hydrolase family 37 signature | 165 | 182 | 4.4E-28 |
| 4 | g17178.t31 | PRINTS | PR00744 | Glycosyl hydrolase family 37 signature | 202 | 219 | 4.4E-28 |
| 1 | g17178.t31 | Pfam | PF01204 | Trehalase | 2 | 227 | 6.4E-80 |
| 9 | g17178.t31 | ProSitePatterns | PS00927 | Trehalase signature 1. | 24 | 37 | - |
| 8 | g17178.t31 | SUPERFAMILY | SSF48208 | Six-hairpin glycosidases | 7 | 228 | 1.29E-74 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004555 | alpha,alpha-trehalase activity | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0005991 | trehalose metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
