Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_4 | g17291 | g17291.t2 | TSS | g17291.t2 | 13040427 | 13040427 |
chr_4 | g17291 | g17291.t2 | isoform | g17291.t2 | 13040611 | 13043303 |
chr_4 | g17291 | g17291.t2 | exon | g17291.t2.exon1 | 13040611 | 13040752 |
chr_4 | g17291 | g17291.t2 | cds | g17291.t2.CDS1 | 13040611 | 13040752 |
chr_4 | g17291 | g17291.t2 | exon | g17291.t2.exon2 | 13041363 | 13041422 |
chr_4 | g17291 | g17291.t2 | cds | g17291.t2.CDS2 | 13041363 | 13041422 |
chr_4 | g17291 | g17291.t2 | exon | g17291.t2.exon3 | 13041489 | 13041605 |
chr_4 | g17291 | g17291.t2 | cds | g17291.t2.CDS3 | 13041489 | 13041605 |
chr_4 | g17291 | g17291.t2 | exon | g17291.t2.exon4 | 13041664 | 13041729 |
chr_4 | g17291 | g17291.t2 | cds | g17291.t2.CDS4 | 13041664 | 13041729 |
chr_4 | g17291 | g17291.t2 | exon | g17291.t2.exon5 | 13041795 | 13041850 |
chr_4 | g17291 | g17291.t2 | cds | g17291.t2.CDS5 | 13041795 | 13041850 |
chr_4 | g17291 | g17291.t2 | exon | g17291.t2.exon6 | 13041911 | 13042071 |
chr_4 | g17291 | g17291.t2 | cds | g17291.t2.CDS6 | 13041911 | 13042071 |
chr_4 | g17291 | g17291.t2 | exon | g17291.t2.exon7 | 13042221 | 13042273 |
chr_4 | g17291 | g17291.t2 | cds | g17291.t2.CDS7 | 13042221 | 13042273 |
chr_4 | g17291 | g17291.t2 | exon | g17291.t2.exon8 | 13042339 | 13042440 |
chr_4 | g17291 | g17291.t2 | cds | g17291.t2.CDS8 | 13042339 | 13042440 |
chr_4 | g17291 | g17291.t2 | exon | g17291.t2.exon9 | 13042499 | 13042538 |
chr_4 | g17291 | g17291.t2 | cds | g17291.t2.CDS9 | 13042499 | 13042538 |
chr_4 | g17291 | g17291.t2 | exon | g17291.t2.exon10 | 13042602 | 13042749 |
chr_4 | g17291 | g17291.t2 | cds | g17291.t2.CDS10 | 13042602 | 13042749 |
chr_4 | g17291 | g17291.t2 | exon | g17291.t2.exon11 | 13042842 | 13043303 |
chr_4 | g17291 | g17291.t2 | cds | g17291.t2.CDS11 | 13042842 | 13043303 |
chr_4 | g17291 | g17291.t2 | TTS | g17291.t2 | NA | NA |
>g17291.t2 Gene=g17291 Length=1407
ATGAGTCCAAAGCAATTTATTGCACTTTTATTATTTTATATTTTTTATTTATTATTTGGT
GCAAGTGTTTTTTATTACACTGAACATGGATATGAAACTGGAAAAAGAGCTGATGAAAAT
GCTGCTCGTCTTGAAGTTAATGCTTTGTTATTAAATAATCTACCAAACAATACCGAACTT
AAAGAAGAAATATTAGGCAAAGTGACAGATTATTGTGGAAAATCTGTGAGGCATCCTTCA
ACAGATTCATTTGTTCCGCCTTATATTTGGTCTTTTTATCACTCATTTTATTTCTCATTT
ATTATTTGTAGTACTGTTGGTTATGGAAATATTTCACCAAGTCATTCATTTGGTCGAATT
TTTTTAATATTTTATGCAATTGTCGGATTGCCATTGCATGCAATACTTTTTGGAGTTATG
GGTAATTTTTGGGGAAAAACTTTTGTCAGAATGTATAAAAAGTACAAAGATTACAAAAAA
TCTACGGATATAAATTACAGACCCAGAAAATTAACTCTTATTGGAAAAATTGCTCTTTAT
GTCACACCTGCCATTATTTTGTTAATTTTCATACCTGCCATTTTATTCACATACTTTGAA
AGATGGGACTATGTTACATCAGTTTATTATGCTTTTGTTACTTTAACAACAATTGGTTTT
GGTGACTATGCTGCAACGTTTAGAGATTTTCAAGAGAGCACTTTTGGATATTATTTTGTA
GCTTATCAAATTTTTGTTATTTTTTGGTTTATTGCAGGAGTAAGCTATGTTGCAATGTGT
ATTGGATTTCTCATTCAAGGCTTGAAAAGTAAACAAGTCAAAAATATTGAACACAATTTG
GCTTTAAATCTCAAAGACACTCAAAAGAGACTTTGGCAAGGTATGCAACGAGATGTTGGA
TTTCTACGAAAAATTCTTAATGAAGTTAATTTTTCTAAGTACAAGCCAATTTACAAAGAT
CCTGAAGAGATCAAACAAAAATTTCGCTCAACTCGTTCACAATCATGTCCACGTTTATTC
ATTTACGATGATGAAGACGAATTTGATTATGATGAAGAAGAAATTTTAAAGTACAAAAGA
AAACGTGCAAATTCTGAAACTCATAAATTTAAACATCGAAATTCAATGTTTGTTCATACA
CATTCTGATACAGAATTAAATAAAATTGATCGACAAAAAACTTTTGAAGCGCTCAAAGCT
GAAATTGAACCGGCGGAAATTCTTGCAAAAGTTACGATTGCATTGGGAGAAATTTTGGAA
GATGAAAATAATCAAGAAGACAACAATGCAGAAGTTCAAGAAAATGAAGAAAATTTCGTG
ACTTTGATGCCAGGAGAAAACCTTTATGCTGGACGTGATCGAAGAGCTTTATCAGTTGTT
CAAATTCCTATAGAAGATTTAGTGATG
>g17291.t2 Gene=g17291 Length=469
MSPKQFIALLLFYIFYLLFGASVFYYTEHGYETGKRADENAARLEVNALLLNNLPNNTEL
KEEILGKVTDYCGKSVRHPSTDSFVPPYIWSFYHSFYFSFIICSTVGYGNISPSHSFGRI
FLIFYAIVGLPLHAILFGVMGNFWGKTFVRMYKKYKDYKKSTDINYRPRKLTLIGKIALY
VTPAIILLIFIPAILFTYFERWDYVTSVYYAFVTLTTIGFGDYAATFRDFQESTFGYYFV
AYQIFVIFWFIAGVSYVAMCIGFLIQGLKSKQVKNIEHNLALNLKDTQKRLWQGMQRDVG
FLRKILNEVNFSKYKPIYKDPEEIKQKFRSTRSQSCPRLFIYDDEDEFDYDEEEILKYKR
KRANSETHKFKHRNSMFVHTHSDTELNKIDRQKTFEALKAEIEPAEILAKVTIALGEILE
DENNQEDNNAEVQENEENFVTLMPGENLYAGRDRRALSVVQIPIEDLVM
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
11 | g17291.t2 | Coils | Coil | Coil | 415 | 436 | - |
10 | g17291.t2 | Coils | Coil | Coil | 464 | 469 | - |
9 | g17291.t2 | Gene3D | G3DSA:1.10.287.70 | - | 3 | 281 | 2.7E-60 |
3 | g17291.t2 | PANTHER | PTHR11003:SF304 | OPEN RECTIFIER POTASSIUM CHANNEL PROTEIN 1 | 5 | 314 | 7.4E-59 |
4 | g17291.t2 | PANTHER | PTHR11003 | POTASSIUM CHANNEL, SUBFAMILY K | 5 | 314 | 7.4E-59 |
6 | g17291.t2 | PRINTS | PR01333 | Two pore domain K+ channel signature | 101 | 129 | 7.9E-14 |
5 | g17291.t2 | PRINTS | PR01333 | Two pore domain K+ channel signature | 216 | 225 | 7.9E-14 |
2 | g17291.t2 | Pfam | PF07885 | Ion channel | 89 | 143 | 7.2E-16 |
1 | g17291.t2 | Pfam | PF07885 | Ion channel | 185 | 266 | 2.8E-12 |
16 | g17291.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 5 | - |
23 | g17291.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 6 | 26 | - |
13 | g17291.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 27 | 86 | - |
22 | g17291.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 87 | 108 | - |
18 | g17291.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 109 | 119 | - |
24 | g17291.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 120 | 144 | - |
14 | g17291.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 145 | 176 | - |
21 | g17291.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 177 | 198 | - |
17 | g17291.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 199 | 203 | - |
20 | g17291.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 204 | 225 | - |
12 | g17291.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 226 | 236 | - |
19 | g17291.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 237 | 265 | - |
15 | g17291.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 266 | 469 | - |
8 | g17291.t2 | SUPERFAMILY | SSF81324 | Voltage-gated potassium channels | 5 | 164 | 1.57E-28 |
7 | g17291.t2 | SUPERFAMILY | SSF81324 | Voltage-gated potassium channels | 178 | 280 | 3.66E-20 |
30 | g17291.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 26 | - |
29 | g17291.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 88 | 110 | - |
26 | g17291.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 122 | 144 | - |
28 | g17291.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 177 | 199 | - |
25 | g17291.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 206 | 228 | - |
27 | g17291.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 243 | 265 | - |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0016020 | membrane | CC |
GO:0005267 | potassium channel activity | MF |
GO:0071805 | potassium ion transmembrane transport | BP |
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed