General information for g17383.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative GILT-like protein 1.
Parent gene
- The parent gene g17383 is located on chr_4: 13330955..13331524 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17383 | g17383.t1 | isoform | g17383.t1 | 13330955 | 13331524 |
| chr_4 | g17383 | g17383.t1 | exon | g17383.t1.exon1 | 13330955 | 13331524 |
| chr_4 | g17383 | g17383.t1 | cds | g17383.t1.CDS1 | 13330955 | 13331524 |
| chr_4 | g17383 | g17383.t1 | TSS | g17383.t1 | NA | NA |
| chr_4 | g17383 | g17383.t1 | TTS | g17383.t1 | NA | NA |
Sequences
>g17383.t1 Gene=g17383 Length=570
ATGTTCCTAAAATTTTCTCTAATATTTTTTCTAACTTTTTTAAAAATTTCTGAAGGAATT
TTAAAAGTTGATATTTTCTTAGAAAGCGAATGTAAATCATCAAAGCAATTTTTACAGGAG
CAAATAAAACCAAATTATGAGCAGATCAAAGGCGATGTTTTGCTGACTTTTGTGCCCTTT
GGGAAATCACATAGCATCACGAATACTTCCGGTATATTTTTTGAGTGCCAACATGGACAC
TTTGAGTGTCATAACAACATTTTTCTGTCGTGTGCTTTAAATTTGATTACTGAAAGTGAC
TTGAGAACTCAATTTATGATTTGTGCAATGGACTACAGCACTCCACTTAATCATTGTGCT
TCTGAAGTTGGATTAAAAATCAGAGAAGTTCATGAATGTGCTGAGTCAAATGATGGAATT
GAATTACAACTTGAAAATGAAAAAAAGACAACACCAATCATTGAAATGAGTGGACATGTG
CCAACAATTGTTTTCAATGAAATTTATGACAAAAATGATGATGAAAAAGCTTTTATGAAT
TTCTTAGAAATTGTTAAGGAAAAAATTTAA
>g17383.t1 Gene=g17383 Length=189
MFLKFSLIFFLTFLKISEGILKVDIFLESECKSSKQFLQEQIKPNYEQIKGDVLLTFVPF
GKSHSITNTSGIFFECQHGHFECHNNIFLSCALNLITESDLRTQFMICAMDYSTPLNHCA
SEVGLKIREVHECAESNDGIELQLENEKKTTPIIEMSGHVPTIVFNEIYDKNDDEKAFMN
FLEIVKEKI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g17383.t1 | PANTHER | PTHR13234:SF56 | GH19763P | 5 | 185 | 7.9E-34 |
| 3 | g17383.t1 | PANTHER | PTHR13234 | GAMMA-INTERFERON INDUCIBLE LYSOSOMAL THIOL REDUCTASE GILT | 5 | 185 | 7.9E-34 |
| 1 | g17383.t1 | Pfam | PF03227 | Gamma interferon inducible lysosomal thiol reductase (GILT) | 22 | 122 | 4.7E-21 |
| 6 | g17383.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 19 | - |
| 7 | g17383.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 4 | - |
| 8 | g17383.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 5 | 14 | - |
| 9 | g17383.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 15 | 19 | - |
| 5 | g17383.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 20 | 189 | - |
| 4 | g17383.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 19 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed