General information for g17448.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g17448 is located on chr_4: 13557767..13566979 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17448 | g17448.t2 | TSS | g17448.t2 | 13557257 | 13557257 |
| chr_4 | g17448 | g17448.t2 | isoform | g17448.t2 | 13557321 | 13558625 |
| chr_4 | g17448 | g17448.t2 | exon | g17448.t2.exon1 | 13557321 | 13557376 |
| chr_4 | g17448 | g17448.t2 | exon | g17448.t2.exon2 | 13557436 | 13557690 |
| chr_4 | g17448 | g17448.t2 | exon | g17448.t2.exon3 | 13557908 | 13558625 |
| chr_4 | g17448 | g17448.t2 | cds | g17448.t2.CDS1 | 13557964 | 13558623 |
| chr_4 | g17448 | g17448.t2 | TTS | g17448.t2 | 13559182 | 13559182 |
Sequences
>g17448.t2 Gene=g17448 Length=1029
ATGGATAAATTAGCATTTCAAAAAGCAATTGATACTCTTAAGAGTACAGATTGCAACTCA
AAAGAAAAAATACAAAAATTTGATCAAATTTATTCAACTCTTTCATTGCTGACTAATCAC
AGCAATTATAAAAATTATCTTCAAAAAGCTGTGCAAATTTTGATATTATTTTGTGAAGAT
AACGACTCGAATGTTCGAATTAGTGCAGAAGAAAATTTAAATCGAATAATAAGAAATTGT
GAGCGGCAGCATCAATTGATTTTGATACAAATTGAGCTTTACCATGAAATTAAGAAAAAT
GGAAATGAAAGAATTTATGAAAACTTTCTCACGAAATCTTCTGAACTGCTTAAATGACTA
TGAAGTAATGAAATTGATTGACCTTCTGATCGATAATTTATCACAAGAATGTGCAATAAA
GAAAAGATGTTCAGCACAAATTATCATAACAATTTTAGAACATTCAACAAGAAATAAATC
TATAATGAGATCAATAATTGTGAGAATTCAAGAAAATTTATCAAAAAGTCAAGAAGTGAA
CACAATTTTAGGAACACTTGGTCTGCTTCGATTGATAATTCCACATTTGATGATGTCACA
AGAATTTCATCAAAAAATAATTGAAATGCTTGAAAATTGTCTAAATTATCTTAAAAATGA
TTCACACAATCATACGATAATTAATGCAAATTTAGAATTTATCAATTCATTGCTAAATGC
AAGTAATGAAAACCATAAAATGTCAAAACTAATCTGCGATAATGAAGCACATAAAGAAAT
ACTTCTATCACGACATTCAGCATTATTGAATAATTCAAGAAAGTCCAGCATTGAAACAAT
AAAAAATCAAGATTTATTGCAAGTTCCAACATCAAATAAATCATCAATTAGTCCTGGCAG
TGGCGATTTTAGTGATGTTGAAGGTGATTCTTTCAAATCAACAGATTTTTCATCATCATC
ACCTGGTGCTTTAAAAAATGTTATTGGTGCAGCTGAAACAATGTCAATAAAATCAACAGA
TTCAATAAA
>g17448.t2 Gene=g17448 Length=220
MKLIDLLIDNLSQECAIKKRCSAQIIITILEHSTRNKSIMRSIIVRIQENLSKSQEVNTI
LGTLGLLRLIIPHLMMSQEFHQKIIEMLENCLNYLKNDSHNHTIINANLEFINSLLNASN
ENHKMSKLICDNEAHKEILLSRHSALLNNSRKSSIETIKNQDLLQVPTSNKSSISPGSGD
FSDVEGDSFKSTDFSSSSPGALKNVIGAAETMSIKSTDSI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g17448.t2 | PANTHER | PTHR10170 | HUNTINGTON DISEASE PROTEIN | 2 | 163 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed