Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17448 g17448.t4 TSS g17448.t4 13557257 13557257
chr_4 g17448 g17448.t4 isoform g17448.t4 13557767 13559187
chr_4 g17448 g17448.t4 exon g17448.t4.exon1 13557767 13559187
chr_4 g17448 g17448.t4 cds g17448.t4.CDS1 13557913 13559187
chr_4 g17448 g17448.t4 TTS g17448.t4 13559182 13559182

Sequences

>g17448.t4 Gene=g17448 Length=1421
TTCGAATTTGCCTCAATCTTTTTTCGCATTACTGTCACTTGATAAAACATCGAAGAAAGA
AAATTTATGCACAAAACCTAATTCCATGTCTTTTATCAATTGCAAAGCGTAGAGAGCCAC
TTGTGATTGAAACATTTGCAGAATTTATGAAAACTTTCTCACGAAATCTTCTGAACTGCT
TAAATGACTATGAAGTAATGAAATTGATTGACCTTCTGATCGATAATTTATCACAAGAAT
GTGCAATAAAGAAAAGATGTTCAGCACAAATTATCATAACAATTTTAGAACATTCAACAA
GAAATAAATCTATAATGAGATCAATAATTGTGAGAATTCAAGAAAATTTATCAAAAAGTC
AAGAAGTGAACACAATTTTAGGAACACTTGGTCTGCTTCGATTGATAATTCCACATTTGA
TGATGTCACAAGAATTTCATCAAAAAATAATTGAAATGCTTGAAAATTGTCTAAATTATC
TTAAAAATGATTCACACAATCATACGATAATTAATGCAAATTTAGAATTTATCAATTCAT
TGCTAAATGCAAGTAATGAAAACCATAAAATGTCAAAACTAATCTGCGATAATGAAGCAC
ATAAAGAAATACTTCTATCACGACATTCAGCATTATTGAATAATTCAAGAAAGTCCAGCA
TTGAAACAATAAAAAATCAAGATTTATTGCAAGTTCCAACATCAAATAAATCATCAATTA
GTCCTGGCAGTGGCGATTTTAGTGATGTTGAAGGTGATTCTTTCAAATCAACAGATTTTT
CATCATCATCACCTGGTGCTTTAAAAAATGTTATTGGTGCAGCTGAAACAATGTCAATAA
AATCAACAGATTCAATAAATTCGTTTTTTACATCAATTCTTGGCAATTCGAGTACTGACA
GTGTTACAAAATTCTTTAGAAAATCATCAACTGATTCGCCAGCACATCAATCAAAATTAA
GTGAATCAGCAGATGAAAAATCAATTGATCTTTCCTTAGGTCATTTAAAAGATGAAAATG
TTGAATATCGTGATTCACAAATGTTGCCTGAAACTGCAGAAATGGCTTTAGATGATAATT
TAGAAATGGATGAAACTCTTGAGATTGTTGAGGCATCAAATAATGAACAAAAAATTTATA
TTGGTTCAATTTATGATCAAAGTATTGTCGAATATATTGTACGACTTGTGTCATCAAAAT
TTCTACTTGATGGAAAACCAAAAATTCTCATTAATGATCAAATTGTAAGAGTTTCAATTA
AAAATTTGGCATTATTGACAATTGCAGCTTGTGTTGAGCTAAAAAGTGAAATTTTATTGC
TTAAACTTTCAAAAGATTACACGGATGAATCAATGATGGTTGAAAGTCTTTTAAGTTATT
TAGTTGATGAAGATATTCGACTTGAAGAAGAAGAAGAAAAA

>g17448.t4 Gene=g17448 Length=425
MKTFSRNLLNCLNDYEVMKLIDLLIDNLSQECAIKKRCSAQIIITILEHSTRNKSIMRSI
IVRIQENLSKSQEVNTILGTLGLLRLIIPHLMMSQEFHQKIIEMLENCLNYLKNDSHNHT
IINANLEFINSLLNASNENHKMSKLICDNEAHKEILLSRHSALLNNSRKSSIETIKNQDL
LQVPTSNKSSISPGSGDFSDVEGDSFKSTDFSSSSPGALKNVIGAAETMSIKSTDSINSF
FTSILGNSSTDSVTKFFRKSSTDSPAHQSKLSESADEKSIDLSLGHLKDENVEYRDSQML
PETAEMALDDNLEMDETLEIVEASNNEQKIYIGSIYDQSIVEYIVRLVSSKFLLDGKPKI
LINDQIVRVSIKNLALLTIAACVELKSEILLLKLSKDYTDESMMVESLLSYLVDEDIRLE
EEEEK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g17448.t4 PANTHER PTHR10170 HUNTINGTON DISEASE PROTEIN 1 416 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed