General information for g17457.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glycerol-3-phosphate phosphatase.
Parent gene
- The parent gene g17457 is located on chr_4: 13585400..13585739 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17457 | g17457.t4 | TSS | g17457.t4 | 13584263 | 13584263 |
| chr_4 | g17457 | g17457.t4 | isoform | g17457.t4 | 13584893 | 13585739 |
| chr_4 | g17457 | g17457.t4 | exon | g17457.t4.exon1 | 13584893 | 13585279 |
| chr_4 | g17457 | g17457.t4 | cds | g17457.t4.CDS1 | 13584893 | 13585279 |
| chr_4 | g17457 | g17457.t4 | exon | g17457.t4.exon2 | 13585338 | 13585431 |
| chr_4 | g17457 | g17457.t4 | cds | g17457.t4.CDS2 | 13585338 | 13585431 |
| chr_4 | g17457 | g17457.t4 | exon | g17457.t4.exon3 | 13585537 | 13585739 |
| chr_4 | g17457 | g17457.t4 | cds | g17457.t4.CDS3 | 13585537 | 13585739 |
| chr_4 | g17457 | g17457.t4 | TTS | g17457.t4 | 13585997 | 13585997 |
Sequences
>g17457.t4 Gene=g17457 Length=684
ATGATCTCAACATCCTACTTAGCTGCTCATTACTTAAAATCTTTAAACTTTAACAAAAAA
GTCTACATCGTCGGCAGCACTGGAATTTCTCGAGAACTTGATGCTGTTGGTATTAAACAT
ACTGGAGTTGGTCAAGATCCTATGAATGGATCTCTAGCAACTTTAGTGAAAGAACAATTC
AAACCAGATCCTGAAATTGGTGCTGTGATTGTTGGTTTTGATGAACACATTAGCTTTCCT
AAAATGATGAAAGCTGCAACATATTTGGATAAAAAAGAAACAATTTTTATTGCTACAAAC
ACTGATGAGAGATTTCCGATGCCTGGTTTTGTTATCCCAGGTACTGGTTCAATCGTTAGA
GCTATTGAAACTTGTGGAGAAAGAAAAGCAATCGTAATGGGTAAACCTGAAAATTGGCTT
TGTGATATTTTCTTTAAAGAAGAAATGAAGAAAGACAGAAGTAGATTTTTAATGGTTGGC
GATCGCCTCAACACAGACATTTTATTTGGCAAGAAGAACAAACTTCAAACACTTTTAGTT
GAAACTGGAGTTCATAAAATCGAGAGAGTGAAGGAAATAATTGAAGAACTTGAAAATAGT
AAAGAACAAGATGAAGAATTAGTTAATCAAATTCCTGATTTTTATATTACAAAATTGGGA
GATCTTCTTAATAATCTTGATTAA
>g17457.t4 Gene=g17457 Length=227
MISTSYLAAHYLKSLNFNKKVYIVGSTGISRELDAVGIKHTGVGQDPMNGSLATLVKEQF
KPDPEIGAVIVGFDEHISFPKMMKAATYLDKKETIFIATNTDERFPMPGFVIPGTGSIVR
AIETCGERKAIVMGKPENWLCDIFFKEEMKKDRSRFLMVGDRLNTDILFGKKNKLQTLLV
ETGVHKIERVKEIIEELENSKEQDEELVNQIPDFYITKLGDLLNNLD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g17457.t4 | Coils | Coil | Coil | 187 | 210 | - |
| 5 | g17457.t4 | Gene3D | G3DSA:3.40.50.1000 | - | 4 | 134 | 1.6E-39 |
| 2 | g17457.t4 | PANTHER | PTHR19288 | 4-NITROPHENYLPHOSPHATASE-RELATED | 2 | 223 | 3.2E-56 |
| 3 | g17457.t4 | PANTHER | PTHR19288:SF75 | FI11325P-RELATED | 2 | 223 | 3.2E-56 |
| 1 | g17457.t4 | Pfam | PF13242 | HAD-hyrolase-like | 132 | 192 | 4.6E-13 |
| 4 | g17457.t4 | SUPERFAMILY | SSF56784 | HAD-like | 3 | 223 | 2.5E-34 |
| 7 | g17457.t4 | TIGRFAM | TIGR01460 | HAD-SF-IIA: HAD hydrolase, family IIA | 2 | 183 | 1.4E-30 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
