General information for g17473.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Sulfotransferase 1E1.
Parent gene
- The parent gene g17473 is located on chr_4: 13633818..13635730 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17473 | g17473.t1 | TTS | g17473.t1 | 13633536 | 13633536 |
| chr_4 | g17473 | g17473.t1 | isoform | g17473.t1 | 13633582 | 13634607 |
| chr_4 | g17473 | g17473.t1 | exon | g17473.t1.exon1 | 13633582 | 13633763 |
| chr_4 | g17473 | g17473.t1 | cds | g17473.t1.CDS1 | 13633582 | 13633763 |
| chr_4 | g17473 | g17473.t1 | exon | g17473.t1.exon2 | 13633817 | 13634274 |
| chr_4 | g17473 | g17473.t1 | cds | g17473.t1.CDS2 | 13633817 | 13634274 |
| chr_4 | g17473 | g17473.t1 | exon | g17473.t1.exon3 | 13634333 | 13634607 |
| chr_4 | g17473 | g17473.t1 | cds | g17473.t1.CDS3 | 13634333 | 13634607 |
| chr_4 | g17473 | g17473.t1 | TSS | g17473.t1 | 13634638 | 13634638 |
Sequences
>g17473.t1 Gene=g17473 Length=915
ATGACTTCAAAATTAGATTTATTTTATCCTTTTAAAACTGTAAAAGCAGAAGGCGAAAAA
TGGAAAAATTTTCCATCTTGTGTTTTATTTAACATTCAGGAACAAAATCTTGATAGAATT
AAACGAGAAAAAATTTATCCTGATGATGTTTTTCTTTGTGGATTTCAAAGAAGTGGAACA
ACAATGATGCAAGAAATAATTTGGCTTATCCTCAATGATTTTGACTTTGAAAAGTCAAAA
ACTGAACTGAAAGATTTGAGATTTCCAACACTTGAATCGATCGAAATGGTTGAGAAAGTT
TACAATAATAAAATAAAAATTAACATGGATTCAATGCAACGACCACGAACAATTAAAACT
CATCTTCCAGTTCAATTGCTTCCTGATGAATTTTGGATTTCTCGTCCTAAAATTATTTTT
CTCACAAGGGATATACGTGATGTCGCAATTTCATGCTTTAATGTCGGTCTGAAATTGCTA
GCTTATAAAAGTTCGATGGAGGAATTTCTTCAAGAATTCTTGGATGATAAGCTCCCTTTA
TGCCCGTACAGAGAACATACTTTGGACTATATGAATATTCCTGATTATCCAAATAGGCTA
AATTTAACATATGAATGGGTCAATGCAAATATAGATGAAGCTATTTTGAAAATTGCAAAA
TTTTTGGGAAAAGAAGTTTCAGATGAAAATTTAAAACTTTTAAAGGACCATGTCGAAATT
GCAAACATGAAAAAAATCGATACAATCAACAGAAGAGAGTTTTTTGAGAATATCACTGAT
AAAAGCAAACCAGAAGAATTCATACGAAAAGGAAAAGTTGAAAATTATAAAGAGGAAATG
CCACAAGAATTTCATGAGAAATTTGATGCATGGATGGAAGAAATTAAGAAAATGAAAAGT
TCTTTTGAATTGTAA
>g17473.t1 Gene=g17473 Length=304
MTSKLDLFYPFKTVKAEGEKWKNFPSCVLFNIQEQNLDRIKREKIYPDDVFLCGFQRSGT
TMMQEIIWLILNDFDFEKSKTELKDLRFPTLESIEMVEKVYNNKIKINMDSMQRPRTIKT
HLPVQLLPDEFWISRPKIIFLTRDIRDVAISCFNVGLKLLAYKSSMEEFLQEFLDDKLPL
CPYREHTLDYMNIPDYPNRLNLTYEWVNANIDEAILKIAKFLGKEVSDENLKLLKDHVEI
ANMKKIDTINRREFFENITDKSKPEEFIRKGKVENYKEEMPQEFHEKFDAWMEEIKKMKS
SFEL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g17473.t1 | Gene3D | G3DSA:3.40.50.300 | - | 8 | 303 | 0 |
| 2 | g17473.t1 | PANTHER | PTHR11783 | SULFOTRANSFERASE SULT | 27 | 294 | 0 |
| 3 | g17473.t1 | PANTHER | PTHR11783:SF180 | GH11818P-RELATED | 27 | 294 | 0 |
| 1 | g17473.t1 | Pfam | PF00685 | Sulfotransferase domain | 47 | 300 | 0 |
| 4 | g17473.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 23 | 295 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008146 | sulfotransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
