General information for g17482.t33
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Serine–pyruvate aminotransferase, mitochondrial.
Parent gene
- The parent gene g17482 is located on chr_4: 13658711..13665993 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17482 | g17482.t33 | TSS | g17482.t33 | 13657411 | 13657411 |
| chr_4 | g17482 | g17482.t33 | isoform | g17482.t33 | 13657464 | 13659248 |
| chr_4 | g17482 | g17482.t33 | exon | g17482.t33.exon1 | 13657464 | 13657527 |
| chr_4 | g17482 | g17482.t33 | cds | g17482.t33.CDS1 | 13657464 | 13657527 |
| chr_4 | g17482 | g17482.t33 | exon | g17482.t33.exon2 | 13657853 | 13657960 |
| chr_4 | g17482 | g17482.t33 | cds | g17482.t33.CDS2 | 13657853 | 13657960 |
| chr_4 | g17482 | g17482.t33 | exon | g17482.t33.exon3 | 13658012 | 13658071 |
| chr_4 | g17482 | g17482.t33 | cds | g17482.t33.CDS3 | 13658012 | 13658071 |
| chr_4 | g17482 | g17482.t33 | exon | g17482.t33.exon4 | 13658133 | 13658509 |
| chr_4 | g17482 | g17482.t33 | cds | g17482.t33.CDS4 | 13658133 | 13658509 |
| chr_4 | g17482 | g17482.t33 | exon | g17482.t33.exon5 | 13658572 | 13658624 |
| chr_4 | g17482 | g17482.t33 | cds | g17482.t33.CDS5 | 13658572 | 13658624 |
| chr_4 | g17482 | g17482.t33 | exon | g17482.t33.exon6 | 13658682 | 13659083 |
| chr_4 | g17482 | g17482.t33 | cds | g17482.t33.CDS6 | 13658682 | 13659083 |
| chr_4 | g17482 | g17482.t33 | exon | g17482.t33.exon7 | 13659155 | 13659248 |
| chr_4 | g17482 | g17482.t33 | cds | g17482.t33.CDS7 | 13659155 | 13659248 |
| chr_4 | g17482 | g17482.t33 | TTS | g17482.t33 | 13659279 | 13659279 |
Sequences
>g17482.t33 Gene=g17482 Length=1158
ATGGATGTGCCAATTCCAGAAATTTTAAAGAAACCAATGGAAGTTGATGAAAAAATAATG
ACAGGTGCTGGACCTTCAAATTATCATCCAAGAATAAGACATGCAATGTCATTACCTGTT
CTTGGTCATCTTCATCCTGAAACATTCAAAATCATGGATGACATTAAAATTGATTTTTAT
AGTTATCTACTTCAGACGAATAATTCTTACACATTTTGTATATCTGGATCAGCTATCGAA
TGTGCTCTTATGAATGTGATTGAAGACAATGACGTTATTGTTATCGGATGTTGTGGCCAA
TGGGGTACGCGTGCAGAAAACATTGCAAAACGATTAAATGCTGATGTAAAAGTCATCAAT
AAAGAACCAGGAGAGCAAATTGAAGTAGAAGAAACCCGAATATTTTTTGAGCAATATCAC
CCAAAAGTTTTCTTTTTGACTCATGGTGAATCAAGCACAGGAATGTTGCAACAAAATTTG
GAACAATTTGGAAATTTGTGTCAGGAATTCGATTGTCTCTTTGTGGTTGATTGTGTTATA
ACAGTTGGATGCACTCCAGTTTATGTTGATAAATGGAAAATTGATGTTGCTTTTATGGGA
ACACAAAAGGTTCTTAATGCTCCACCAGGAATTTCTCCGATTACATTCAGTGCACGAGCT
TTTGAAAAAATCGTTAAAAGAAAGTCACCAGTAAAAAGCTACAATTATGATGCAGTAAAT
CTCAGTAAATATTGGAAATCGGGCGATGAACCAAGAGTTTATCATCATACAGTTTGCTCA
ACATTACTCTACGGTTTGCGAGAGGCAATTGCAATTTTCATTGAGAATGGTGGTTTAGAA
GCTTCTTGGAAAAATCATCAAAATGTTGCCAAACATTTTTATACTCTGTTGGAAAAGAAT
GGTTTGGAATTATTCATTACTGATCCTAAAAATCGTGTTCCATCAGTTACAGCTGTAAAA
GTTCCTGAGAATATCGATGCAAATGAAATTATAAAACATTCAATGAATGAATATAATGTT
GAAATCAGTGGTGGAATGGGACAAACTAAAGGAAAAATTTTAAGAGTTGGACTTATGGGA
ATAAATTGTAAAGAAATCGTTGCAGAATGCGTTGCAAAAATTCTTATTGAAGCAACGAGA
AAGTTGAATGAAGAATAA
>g17482.t33 Gene=g17482 Length=385
MDVPIPEILKKPMEVDEKIMTGAGPSNYHPRIRHAMSLPVLGHLHPETFKIMDDIKIDFY
SYLLQTNNSYTFCISGSAIECALMNVIEDNDVIVIGCCGQWGTRAENIAKRLNADVKVIN
KEPGEQIEVEETRIFFEQYHPKVFFLTHGESSTGMLQQNLEQFGNLCQEFDCLFVVDCVI
TVGCTPVYVDKWKIDVAFMGTQKVLNAPPGISPITFSARAFEKIVKRKSPVKSYNYDAVN
LSKYWKSGDEPRVYHHTVCSTLLYGLREAIAIFIENGGLEASWKNHQNVAKHFYTLLEKN
GLELFITDPKNRVPSVTAVKVPENIDANEIIKHSMNEYNVEISGGMGQTKGKILRVGLMG
INCKEIVAECVAKILIEATRKLNEE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g17482.t33 | Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase | 15 | 373 | 4.6E-129 |
| 7 | g17482.t33 | Gene3D | G3DSA:3.40.640.10 | - | 29 | 276 | 4.6E-129 |
| 2 | g17482.t33 | PANTHER | PTHR21152 | AMINOTRANSFERASE CLASS V | 2 | 377 | 1.6E-110 |
| 3 | g17482.t33 | PANTHER | PTHR21152:SF22 | SERINE–PYRUVATE AMINOTRANSFERASE | 2 | 377 | 1.6E-110 |
| 8 | g17482.t33 | PIRSF | PIRSF000524 | SPT | 11 | 384 | 8.3E-93 |
| 1 | g17482.t33 | Pfam | PF00266 | Aminotransferase class-V | 42 | 367 | 1.3E-40 |
| 5 | g17482.t33 | ProSitePatterns | PS00595 | Aminotransferases class-V pyridoxal-phosphate attachment site. | 194 | 214 | - |
| 4 | g17482.t33 | SUPERFAMILY | SSF53383 | PLP-dependent transferases | 6 | 371 | 2.48E-77 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
- This transcript has been annotated with K00830 (alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed