Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Serine–pyruvate aminotransferase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17482 g17482.t94 TSS g17482.t94 13657411 13657411
chr_4 g17482 g17482.t94 isoform g17482.t94 13657856 13659271
chr_4 g17482 g17482.t94 exon g17482.t94.exon1 13657856 13657967
chr_4 g17482 g17482.t94 cds g17482.t94.CDS1 13657894 13657967
chr_4 g17482 g17482.t94 exon g17482.t94.exon2 13658022 13658071
chr_4 g17482 g17482.t94 cds g17482.t94.CDS2 13658022 13658071
chr_4 g17482 g17482.t94 exon g17482.t94.exon3 13658133 13659083
chr_4 g17482 g17482.t94 cds g17482.t94.CDS3 13658133 13658536
chr_4 g17482 g17482.t94 exon g17482.t94.exon4 13659154 13659271
chr_4 g17482 g17482.t94 TTS g17482.t94 13659279 13659279

Sequences

>g17482.t94 Gene=g17482 Length=1231
CTGGACCTTCAAATTATCATCCAAGAATAAGACATGCAATGTCATTACCTGTTCTTGGTC
ATCTTCATCCTGAAACATTCAAAATCATGGATGACATTAAAATTGGTGTCAATTATCTAC
TTCAGACGAATAATTCTTACACATTTTGTATATCTGGATCAGCTATCGAATGTGCTCTTA
TGAATGTGATTGAAGACAATGACGTTATTGTTATCGGATGTTGTGGCCAATGGGGTACGC
GTGCAGAAAACATTGCAAAACGATTAAATGCTGATGTAAAAGTCATCAATAAAGAACCAG
GAGAGCAAATTGAAGTAGAAGAAACCCGAATATTTTTTGAGCAATATCACCCAAAAGTTT
TCTTTTTGACTCATGGTGAATCAAGCACAGGAATGTTGCAACAAAATTTGGAACAATTTG
GAAATTTGTGTCAGGAATTCGATTGTCTCTTTGTGGTTGATTGTGTTATAACAGTTGGAT
GCACTCCAGTTTATGTTGATAAATGGAAAATTGATGTTGCTTTTATGGGAACACAAAAGG
TTTACACAAAAGCTAACTTTTTTTAATGTTCATAAAAAATTATTTTTGTGTAAAATTGCA
GGTTCTTAATGCTCCACCAGGAATTTCTCCGATTACATTCAGTGCACGAGCTTTGTGAGA
TTTTTTTGAATTTTTAAAAAATCTAAAAAAATTTAAAATTTTTGTTTTTAGTGAAAAAAT
CGTTAAAAGAAAGTCACCAGTAAAAAGCTACAATTATGATGCAGTAAATCTCAGTAAATA
TTGGAAATCGGGCGATGAACCAAGAGTTTATCATCATACAGTTTGCTCAACATTACTCTA
CGGTTTGCGAGAGGCAATTGCAATTTTCATTGAGAATGGTGGTTTAGAAGCTTCTTGGAA
AAATCATCAAAATGTTGCCAAACATTTTTATACTCTGTTGGAAAAGAATGGTTTGGAATT
ATTCATTACTGATCCTAAAAATCGTGTTCCATCAGTTACAGCTGTAAAAGTTCCTGAGAA
TATCGATGCAAATGAAATTATAAAACATTCAATGAATGAATATAATGTTGAAATCAGTGG
TGGAATGGGACAAACTAAAGGAAAAATTTTAAGGAGTTGGACTTATGGGAATAAATTGTA
AAGAAATCGTTGCAGAATGCGTTGCAAAAATTCTTATTGAAGCAACGAGAAAGTTGAATG
AAGAATAAAAATAAATTAATAACAACATTAT

>g17482.t94 Gene=g17482 Length=175
MSLPVLGHLHPETFKIMDDIKIGVNYLLQTNNSYTFCISGSAIECALMNVIEDNDVIVIG
CCGQWGTRAENIAKRLNADVKVINKEPGEQIEVEETRIFFEQYHPKVFFLTHGESSTGML
QQNLEQFGNLCQEFDCLFVVDCVITVGCTPVYVDKWKIDVAFMGTQKVYTKANFF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g17482.t94 Gene3D G3DSA:3.40.640.10 - 1 168 0
2 g17482.t94 PANTHER PTHR21152 AMINOTRANSFERASE CLASS V 4 169 0
3 g17482.t94 PANTHER PTHR21152:SF22 SERINE–PYRUVATE AMINOTRANSFERASE 4 169 0
1 g17482.t94 Pfam PF00266 Aminotransferase class-V 7 169 0
4 g17482.t94 SUPERFAMILY SSF53383 PLP-dependent transferases 1 167 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003824 catalytic activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed