General information for g17514.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutathione S-transferase 1, isoform D.
Parent gene
- The parent gene g17514 is located on chr_4: 13765025..13766935 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17514 | g17514.t2 | TSS | g17514.t2 | 13764075 | 13764075 |
| chr_4 | g17514 | g17514.t2 | isoform | g17514.t2 | 13764270 | 13766935 |
| chr_4 | g17514 | g17514.t2 | exon | g17514.t2.exon1 | 13764270 | 13765836 |
| chr_4 | g17514 | g17514.t2 | cds | g17514.t2.CDS1 | 13764546 | 13765025 |
| chr_4 | g17514 | g17514.t2 | exon | g17514.t2.exon2 | 13765991 | 13766088 |
| chr_4 | g17514 | g17514.t2 | exon | g17514.t2.exon3 | 13766146 | 13766379 |
| chr_4 | g17514 | g17514.t2 | exon | g17514.t2.exon4 | 13766806 | 13766935 |
| chr_4 | g17514 | g17514.t2 | TTS | g17514.t2 | NA | NA |
Sequences
>g17514.t2 Gene=g17514 Length=2029
ATGACACTTCATCGTCCAACGCTTTTTTATGTTCCATTAAGTCCACCAGCGCGAGCTGTA
ATGCTTACTGCCAAAGAAATTGAGCTTGATCTTGAAGTCAAGTATGTAAAACTAAAATTT
TTCATAATATTTTAACAAATTTTCAAATTTTTACTCAGACTAGTTGATCTTTTTGCTCTT
GAACAAAAAAGTGCATCATATCGAAAAATCAATCCACTTGGTAAAATTCCAGCCTTAATT
GATGATGACATTTATATTTGGGATTCTCATGCAATTATGATTTATATTGTTGAAAAATTT
GCTGAAGATGATTCACTTTATCCACATGATTTAATCTTACGTACGAAAGTCAATCAAATG
TTATTTTTCGAGGCAACTGTTTTATTTCAATTACTTTCTGACATTGTTGTACCGATTTAT
CATCAAAAAATGAAGGAAGTTCCACAATCACTTACTAATTCGGTCAAAGATGCTTATGAT
GTGATTGAAACGATGTTGAAAAGTGGTCAAAAATACATTTGTGGTGAAACTTTGACCATT
GCTGATTTGAGCATTTGGACTACTTTGCTATCATTGAGATTTCTAGTGCCAATTGATAGC
AATAAATTTCTTAAACTTGATAACTGGTTAAAATTGATGAAATCGAGGCCAACTTACGAT
ATGAATCAAAGTGGAGCTAATCAGCATTATGGATTCATAAGATCATGCATAGAAGGAAAA
CCTGTCATTCCAGTGCCAATTACTGTTCAAAAATAATTTTTTATTGATATAAAATTTTTA
TCTTATCTAAATAACTTAAATCAATGATAAATTTTTGTGTCTTTTAATTCAATTTATAGT
GCATTTTAGACTTGACTGATGATAAAGTGTTGCAATTGTTATTTAATGATATAATCATGA
TAAGCTTGATTGTCACTATTGTTTCATTTAAAGATAAGATTAAAAGATAGTAAATGAAGA
ATTTTTGTGAGTTTTTTTGGGTCGTTTTTATCAATTGAAACTTAAAAGTCTTAATGAACT
TTGGAAAATTTTAGGAATTTTTTTAATTTACCTATCATGGAAGACTTAGAATGAATTTAT
TAAAATAAAATTTAAAAGTAAAAAAAAAAAATTTATAAGAAATTTTGCGATATTTCAGAT
CACACAAAAAATATAAATCTTAAGTCTATCAATCTTTCAATATTTTAATGAACGGAAAAT
TTAAATTTAGAGTTTTTAAAAAATATTAAAGTCATTTCAATTTATCTATAGAAACCTAAC
ATTAAGTCTATTTATTTAAAAGCAGACTCTTTGTGTTGTTTCCATCCTAATTTTTTTAAA
CGATTTGTTCAGAGATTCTTAAATTTCAAATTATTCGTACAAATTTAAACTCCATGATCA
GCATTGTATTTTCTAGTGTAAGCTGCTTCACGAATAATTGCACGATGAATTCCAATGACA
CCAATAATGAACAGAATATTAAGTATCGAATATCCAATGTAAACTAATGAAACATTTATA
AGTCCCAAACTAAATGTTACAACTGAGAGAAAAACAGCAATGACGTAGTATGGTGGAAAG
AAAAAAATTTTTCACGAGCTGTATTTACTCCTAAAGGAAGAAGGGCATTGAAAAGAATTC
CAAGAAAGTAAGCACTCATTTCAATCACTAATCCATGTTCAGCATCTTTGAAATTTGTTT
TATTTGGATTAAAATCTTTTCGAGAAATAATGTTGTATCGACTAATTTCATCGGTATTTG
TTAATTGAATGTATTCATAAAATACTAAAAATCGATATAAAAAGAAAATCAAGCAACTGA
TAACGTTAAAAATCGAAATTATCCAAGCTGTTTTGGTTATTGTCATTATGATGAATTTTA
TTTGGTGCTTATTAGCCTCAAAAGTTTAATGATTTTTTGTACTAAAGATTGAGGATGAAC
TAAATTAACAATTTTTAAATTTTTCACTGACGATTTTTTAATATTTCTTAATTTAAAATT
AATTTATCCACGTCTCTGCTTTTACTCTCACGATAAAACTTTACTGACT
>g17514.t2 Gene=g17514 Length=159
MIYIVEKFAEDDSLYPHDLILRTKVNQMLFFEATVLFQLLSDIVVPIYHQKMKEVPQSLT
NSVKDAYDVIETMLKSGQKYICGETLTIADLSIWTTLLSLRFLVPIDSNKFLKLDNWLKL
MKSRPTYDMNQSGANQHYGFIRSCIEGKPVIPVPITVQK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g17514.t2 | CDD | cd03177 | GST_C_Delta_Epsilon | 22 | 136 | 1.15033E-28 |
| 5 | g17514.t2 | Gene3D | G3DSA:1.20.1050.10 | - | 10 | 148 | 5.2E-37 |
| 2 | g17514.t2 | PANTHER | PTHR43969:SF4 | FI01423P-RELATED | 1 | 145 | 4.8E-36 |
| 3 | g17514.t2 | PANTHER | PTHR43969 | GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED | 1 | 145 | 4.8E-36 |
| 1 | g17514.t2 | Pfam | PF14497 | Glutathione S-transferase, C-terminal domain | 48 | 125 | 3.3E-10 |
| 8 | g17514.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 27 | - |
| 9 | g17514.t2 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 28 | 48 | - |
| 7 | g17514.t2 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 49 | 159 | - |
| 6 | g17514.t2 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 18 | 141 | 15.923 |
| 4 | g17514.t2 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 3 | 127 | 1.91E-22 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
