Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Scoloptoxin SSD14.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
HiC_scaffold_16 g17609 g17609.t1 isoform g17609.t1 11904 12287
HiC_scaffold_16 g17609 g17609.t1 exon g17609.t1.exon1 11904 12287
HiC_scaffold_16 g17609 g17609.t1 cds g17609.t1.CDS1 11904 12287
HiC_scaffold_16 g17609 g17609.t1 TSS g17609.t1 NA NA
HiC_scaffold_16 g17609 g17609.t1 TTS g17609.t1 NA NA

Sequences

>g17609.t1 Gene=g17609 Length=384
GAAATTAAAGGACTTTGGGAATTGCATCAAAAATTTGGAAGTTTAGAATGGAAAACTTTG
CTGCAACCTGTGATTAAATTATGTAAAGAAGGTCATGTTGTGTCAAATTATTTGCAAAAT
GTTTTTGGTCGTTATGAAGAAAGAATTTTCAATGAACCAAGTTTGCGAGAAATTTTTATT
GATCCTGAAACAAATAAACTTTACAAAGAGGGAGAAAAAGTTAAAAGGTTGAAACTTGCG
GAAACCTTGGAAATTATTGCTAGAGATGGTGTAGATGCAATTTATGGAGGTGGTGACATC
GGAAAAAAATTAATTGAAGATGTTCAAAGTTATGGTGGAATTTTAACCGAAGAAGATTTG
ATAAATTATGAGTATGATTTATGA

>g17609.t1 Gene=g17609 Length=127
EIKGLWELHQKFGSLEWKTLLQPVIKLCKEGHVVSNYLQNVFGRYEERIFNEPSLREIFI
DPETNKLYKEGEKVKRLKLAETLEIIARDGVDAIYGGGDIGKKLIEDVQSYGGILTEEDL
INYEYDL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g17609.t1 PANTHER PTHR11686 GAMMA GLUTAMYL TRANSPEPTIDASE 1 124 0e+00
3 g17609.t1 PANTHER PTHR11686:SF51 GAMMA-GLUTAMYL TRANSPEPTIDASE, ISOFORM A 1 124 0e+00
5 g17609.t1 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 13 32 4e-07
4 g17609.t1 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 114 127 4e-07
1 g17609.t1 Pfam PF01019 Gamma-glutamyltranspeptidase 1 125 0e+00
6 g17609.t1 SUPERFAMILY SSF56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases) 2 125 0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006751 glutathione catabolic process BP
GO:0036374 glutathione hydrolase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed