General information for g17701.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g17701 is located on HiC_scaffold_86: 2428..2964 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| HiC_scaffold_86 | g17701 | g17701.t1 | isoform | g17701.t1 | 2428 | 2964 |
| HiC_scaffold_86 | g17701 | g17701.t1 | exon | g17701.t1.exon1 | 2428 | 2747 |
| HiC_scaffold_86 | g17701 | g17701.t1 | cds | g17701.t1.CDS1 | 2428 | 2747 |
| HiC_scaffold_86 | g17701 | g17701.t1 | exon | g17701.t1.exon2 | 2832 | 2964 |
| HiC_scaffold_86 | g17701 | g17701.t1 | cds | g17701.t1.CDS2 | 2832 | 2964 |
| HiC_scaffold_86 | g17701 | g17701.t1 | TSS | g17701.t1 | NA | NA |
| HiC_scaffold_86 | g17701 | g17701.t1 | TTS | g17701.t1 | NA | NA |
Sequences
>g17701.t1 Gene=g17701 Length=453
ATGAAGCACACAAGACCATCTGTTCCATCACCATCATCATCATCTTCCTCGAATACTCCA
ATATCAAGTCCAAGTCATCAGCAACAACAAACAACAGCAACAAAAGCCAAAAGTGCGGCA
TCAACATCCAACTATTCAAGTCTTATGGCTAAAAGTGCAGTTACAGCATCACCAAATATC
AGTGGTGGAAGTAAAAAGAAAAGTAAACAAAAAGCTTATTCAGATCCAAAAATGTCAAGT
GAAATTGATGCTTCAAATGGAAGCTGCAAGTTATCCACCACCATTGCCACCACGTACAAC
ACCAACTGTGATGTCTTTGGTCAACCAATTGTCAATAAAGATTCATCTGATGGAATTTCA
CCAACCATTGATGGTCGACCATTGCCAAATAGTTGTGCAACTCAAATGCATTTTCCTTTA
ATCACGACAATTTTGCTGTTAGAGATGGAATGA
>g17701.t1 Gene=g17701 Length=150
MKHTRPSVPSPSSSSSSNTPISSPSHQQQQTTATKAKSAASTSNYSSLMAKSAVTASPNI
SGGSKKKSKQKAYSDPKMSSEIDASNGSCKLSTTIATTYNTNCDVFGQPIVNKDSSDGIS
PTIDGRPLPNSCATQMHFPLITTILLLEME
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g17701.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - |
| 1 | g17701.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 86 | - |
| 3 | g17701.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 14 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed