Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
HiC_scaffold_370 g17797 g17797.t1 isoform g17797.t1 218 1075
HiC_scaffold_370 g17797 g17797.t1 exon g17797.t1.exon1 218 1075
HiC_scaffold_370 g17797 g17797.t1 cds g17797.t1.CDS1 218 1075
HiC_scaffold_370 g17797 g17797.t1 TSS g17797.t1 NA NA
HiC_scaffold_370 g17797 g17797.t1 TTS g17797.t1 NA NA

Sequences

>g17797.t1 Gene=g17797 Length=858
ATGACAGAAAATATGGAACTTGACAACGTGCAGCTAACACAACAAAATAAAAAACAGAAG
GTCACTCGCTTTAACGTTCCTATTCGCAACACCTATGAGTGTTTGAATAATGATGATGAT
GGGCAAACCATTGAAACAATACTGACAAAAGGCAACAAGCAAAACAACCAAATATCACAA
AAACCTCCACCAATTAACCTATTTGGCATAACTTTACAACAACTTGACAATATTTTAAAA
CAATTAGACAAAATAAATTATGAGCTTAAACTGACAACAGAAGGCATCAAACTGTTTGCC
AAAACCATTAGTGTGTATAAGAATATTCGAGAATTACTGAAAAAAGCTAATGTTCAATAC
TATACTCATCAACTCCGTGAAGAGCAAATGACAAAAATGGTCCTCCATGGGCTTCCTGAT
TCGTACGTTATAACAATAGTCCAAGCATTAAACGAGGTTAATTTATACCCAGTAATGGTC
AAAAATATGCAAATCAAAAACTCGCGATATGACGGTCATGCTGTGTTTCTCGTGTACTTT
ATGAAAAAAGATAACGTCAGACTTAGTGACTTAATTGAAAACCATCGAGTGGTCCACTGC
ATACGTGTGAAATGGGAGCACTACAAAAATCCCTCCAAAGGTCCAACGCAATGCCGAAAC
TGCCATCGTTATGGCCATGGATCAAACCATTGCGCAATTGCTCCGCGATGCGTAAGATGT
GCAAAAAACCATAAATCAGAAGACTGTCCATTACTCAAAAATGAATTTGGTGAAATCGTA
CGCAAGAGAATTGATGAATCCGAGTTAAGATGTGCTCTCTGTGGACTCAATCATGCAGCA
AGCTTTAAGAACTGCTGA

>g17797.t1 Gene=g17797 Length=285
MTENMELDNVQLTQQNKKQKVTRFNVPIRNTYECLNNDDDGQTIETILTKGNKQNNQISQ
KPPPINLFGITLQQLDNILKQLDKINYELKLTTEGIKLFAKTISVYKNIRELLKKANVQY
YTHQLREEQMTKMVLHGLPDSYVITIVQALNEVNLYPVMVKNMQIKNSRYDGHAVFLVYF
MKKDNVRLSDLIENHRVVHCIRVKWEHYKNPSKGPTQCRNCHRYGHGSNHCAIAPRCVRC
AKNHKSEDCPLLKNEFGEIVRKRIDESELRCALCGLNHAASFKNC

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed