General information for g17802.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been not been annotated.
Parent gene
- The parent gene g17802 is located on HiC_scaffold_373: 34028..34309 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| HiC_scaffold_373 | g17802 | g17802.t1 | isoform | g17802.t1 | 34028 | 34309 |
| HiC_scaffold_373 | g17802 | g17802.t1 | exon | g17802.t1.exon1 | 34028 | 34309 |
| HiC_scaffold_373 | g17802 | g17802.t1 | cds | g17802.t1.CDS1 | 34028 | 34309 |
| HiC_scaffold_373 | g17802 | g17802.t1 | TSS | g17802.t1 | NA | NA |
| HiC_scaffold_373 | g17802 | g17802.t1 | TTS | g17802.t1 | NA | NA |
Sequences
>g17802.t1 Gene=g17802 Length=282
ATGCTTATGACTGACAAATGTCCATCATTCAAGCTTGTTACACCATTTGAATATGAAAAA
AGAGGAAGTCATTTGAGTTGTCAACATGAAAATGCAAATGAAATCAGCAAATGGATGAGA
AAACGAAATATTTATAGTGATTTTATTTCTCCTGATATTCTTATATTTGCAATGACTCCT
TTATATACAAAATTTGTTGATATTTGGAATGCAATTGAAAATATTTCGGATATTGTTAAA
AATGTTGAATCAAAAACTTTGATGAAAGTTGTGTTACTTTAA
>g17802.t1 Gene=g17802 Length=93
MLMTDKCPSFKLVTPFEYEKRGSHLSCQHENANEISKWMRKRNIYSDFISPDILIFAMTP
LYTKFVDIWNAIENISDIVKNVESKTLMKVVLL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g17802.t1 | Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase | 1 | 91 | 0.00e+00 |
| 1 | g17802.t1 | SUPERFAMILY | SSF53383 | PLP-dependent transferases | 7 | 81 | 4.13e-05 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed