General information for g17837.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Probable cytochrome P450 313b1.
Parent gene
- The parent gene g17837 is located on HiC_scaffold_385: 33275..34897 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| HiC_scaffold_385 | g17837 | g17837.t1 | isoform | g17837.t1 | 33275 | 34897 |
| HiC_scaffold_385 | g17837 | g17837.t1 | exon | g17837.t1.exon1 | 33275 | 33882 |
| HiC_scaffold_385 | g17837 | g17837.t1 | cds | g17837.t1.CDS1 | 33275 | 33882 |
| HiC_scaffold_385 | g17837 | g17837.t1 | exon | g17837.t1.exon2 | 34030 | 34897 |
| HiC_scaffold_385 | g17837 | g17837.t1 | cds | g17837.t1.CDS2 | 34030 | 34897 |
| HiC_scaffold_385 | g17837 | g17837.t1 | TSS | g17837.t1 | NA | NA |
| HiC_scaffold_385 | g17837 | g17837.t1 | TTS | g17837.t1 | NA | NA |
Sequences
>g17837.t1 Gene=g17837 Length=1476
ATGTCGCTGATTTTAATAATTTTAGTAGTAACTTTAACTTCACTTTTTGCAATTTTTCGC
TTCAAACATCGAAGATTTTATAAATTGGCAGCGAAAATTCCAAAACTTCCTGGTGGACTT
CCAATAATTGGAGCAACTCATATTTTTATGACAGCTGAACCAAAGGATTATTTGCCAATA
ATGTTGGATATGATTAAAAAAGACATGGTAATTGGATCAGTTTGGTTTGGGACACAATTT
GCTGTCATTTTAAATACAGTTGAAGATTTTCAAAAAGTTTTAACTTCACCAAATTGCATC
AATAAACCAAAACTTCTTTTTGATGCTTTCTTTTCTGATTCTGCAAGTTTTTGTGTTAAT
AATAATCCACATGAAAAGAGAAGAAAACTTTTAAATCCATCATTTACAAGTTTGATGTTA
AATAAAACAAATTTTCATACAAATGAAACAATTAAAGGATTTATAAATAAAATAAATGCA
AAAAGTGATGGAAAAACTATTGATATTTATCACGACATTGCTGCATGTGCTTTGAGAGGG
ACACTTCATGCTCATTTTGATTATGATGATGATTCACTTGATTATAAAGTTGTTAAAGGA
TTTGATGACTTCAAACCTTTAATAATGCAACGCTTAGGCAAACCATGGCTTTCATTCAAG
CCATTTTTCAAACTATCAAAACTCTCAAAACAAGTTGAAGCTGTTAGAACACCAATTTAT
GAATGCATCAACAAAATCATCGAAAGCAACAAACATCATCGTATTAAACTTGAAGGTCGT
TGTGTGTCAACAATTCGACAACTTTTAGATACAAAACAAAAATTATCAGATGAAGAAATA
GCTGAAGAAATTTTTATTTTTATTTATGCATCACATGAAACTTCAGCTTTAGCTTTATCA
GCTTGTCTTTTGCTTCTTGCAATGCATAAAAATGTTGAAGAAAAAGTTTTTGAAGAAATT
AAAAATGCAAAATTAAGTGAAGAATTTACGTCCATTAGTAATGAAGAAACACAAAGTTTT
CCATACATTGAAATGGTTATAAAAGAAACAATGCGACTTTTCCCACCAGTTGCTGTGACT
TTTAGGGAAACAATTGCTGAAGTTGAAGTTGGTGATTATTTAATTCCACCTGATACAATT
GTTGGTTTGCCAGTTTTATTAATTCATAGAAATGAAAAAATTTGGGGAAAAGATGCTGGA
AGTTTCAGACCAGAACGTTTTGAACCAGAAGAATTTAAAAAAATTCCACAATTTGCATTT
TTACCTTTTCTGTTGGGAAAACGAACTTGCATTGGTTACAAATATGCAATGTATTTTATG
AAAATTTTTATTATAAATTTTGTAAAAAATTACAAAGTTGAAACAGATTTAAAATTTGAT
GAACTAAAAACTCAAATGACGCCAGCAACTTCACTTTTACAGGCTATCCAATTAAAATTA
TTAAAAGGAAGTGAAAATTTTTTAATAGGTCAATAA
>g17837.t1 Gene=g17837 Length=491
MSLILIILVVTLTSLFAIFRFKHRRFYKLAAKIPKLPGGLPIIGATHIFMTAEPKDYLPI
MLDMIKKDMVIGSVWFGTQFAVILNTVEDFQKVLTSPNCINKPKLLFDAFFSDSASFCVN
NNPHEKRRKLLNPSFTSLMLNKTNFHTNETIKGFINKINAKSDGKTIDIYHDIAACALRG
TLHAHFDYDDDSLDYKVVKGFDDFKPLIMQRLGKPWLSFKPFFKLSKLSKQVEAVRTPIY
ECINKIIESNKHHRIKLEGRCVSTIRQLLDTKQKLSDEEIAEEIFIFIYASHETSALALS
ACLLLLAMHKNVEEKVFEEIKNAKLSEEFTSISNEETQSFPYIEMVIKETMRLFPPVAVT
FRETIAEVEVGDYLIPPDTIVGLPVLLIHRNEKIWGKDAGSFRPERFEPEEFKKIPQFAF
LPFLLGKRTCIGYKYAMYFMKIFIINFVKNYKVETDLKFDELKTQMTPATSLLQAIQLKL
LKGSENFLIGQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g17837.t1 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 17 | 482 | 1.3E-83 |
| 2 | g17837.t1 | PANTHER | PTHR24291:SF145 | CYTOCHROME P450 4AA1-RELATED | 9 | 464 | 3.7E-65 |
| 3 | g17837.t1 | PANTHER | PTHR24291 | CYTOCHROME P450 FAMILY 4 | 9 | 464 | 3.7E-65 |
| 8 | g17837.t1 | PRINTS | PR00385 | P450 superfamily signature | 290 | 307 | 3.0E-8 |
| 7 | g17837.t1 | PRINTS | PR00463 | E-class P450 group I signature | 299 | 325 | 2.4E-7 |
| 6 | g17837.t1 | PRINTS | PR00463 | E-class P450 group I signature | 344 | 362 | 2.4E-7 |
| 10 | g17837.t1 | PRINTS | PR00385 | P450 superfamily signature | 345 | 356 | 3.0E-8 |
| 5 | g17837.t1 | PRINTS | PR00463 | E-class P450 group I signature | 420 | 430 | 2.4E-7 |
| 9 | g17837.t1 | PRINTS | PR00385 | P450 superfamily signature | 421 | 430 | 3.0E-8 |
| 4 | g17837.t1 | PRINTS | PR00463 | E-class P450 group I signature | 430 | 453 | 2.4E-7 |
| 11 | g17837.t1 | PRINTS | PR00385 | P450 superfamily signature | 430 | 441 | 3.0E-8 |
| 1 | g17837.t1 | Pfam | PF00067 | Cytochrome P450 | 37 | 470 | 2.6E-67 |
| 16 | g17837.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 17 | - |
| 17 | g17837.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 18 | g17837.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 12 | - |
| 19 | g17837.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 13 | 17 | - |
| 15 | g17837.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 18 | 491 | - |
| 13 | g17837.t1 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 37 | 462 | 1.11E-81 |
| 12 | g17837.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 2 | 19 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed