General information for g17840.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Probable cytochrome P450 313b1.
Parent gene
- The parent gene g17840 is located on HiC_scaffold_385: 38138..40035 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| HiC_scaffold_385 | g17840 | g17840.t1 | isoform | g17840.t1 | 38138 | 40035 |
| HiC_scaffold_385 | g17840 | g17840.t1 | exon | g17840.t1.exon1 | 38138 | 38692 |
| HiC_scaffold_385 | g17840 | g17840.t1 | cds | g17840.t1.CDS1 | 38138 | 38692 |
| HiC_scaffold_385 | g17840 | g17840.t1 | exon | g17840.t1.exon2 | 38992 | 39253 |
| HiC_scaffold_385 | g17840 | g17840.t1 | cds | g17840.t1.CDS2 | 38992 | 39253 |
| HiC_scaffold_385 | g17840 | g17840.t1 | exon | g17840.t1.exon3 | 39437 | 40035 |
| HiC_scaffold_385 | g17840 | g17840.t1 | cds | g17840.t1.CDS3 | 39437 | 40035 |
| HiC_scaffold_385 | g17840 | g17840.t1 | TSS | g17840.t1 | NA | NA |
| HiC_scaffold_385 | g17840 | g17840.t1 | TTS | g17840.t1 | NA | NA |
Sequences
>g17840.t1 Gene=g17840 Length=1416
ATGTTTTTAAGTCTCACATTTTTAGCTTCAATTTTTATCACAATTCAATTCTATAAATGG
ATCAAATTTTATCTAAAAATTTCTAAAATTCCTGGTCCAAAAAATCAAATTCCATTCTTT
GGTATAATCAATAATTTCATTGGAGAAAAAGTTGGCAATTATGGAAAAAATTTTTTAGAA
ATTATTAGTAAAACTGAACCAATCCAAAAAGTTTGGTTTGGTCCAAAAATTTTCATCATT
CCAAATACACCAGAAATGTTCAAGACAATTTTTACATCACTTTATTGTGTTGACAAACCA
AGATATATTTATGGTGGATTTTTTGCAAATAATGGCTTACTTTCAAGCAATGGCAGTGTA
CAGGAAAAACATAGAAAAATTCTAAGCTATTCAATGACTCCGAAAATGTTAAATCAACTT
GTGCCAGTTTTTGAAGAAAAAATTCAGAAATTTATAAAAAGAATGAAAAATAAAATTGAT
GGTGATGAATTTAATGTTTTTGAAGATGTTGCTGCATGTACTTTAGAAGCATTAGTGAAA
GGAAATTTTCAATATGATTATGACTGTTATGAAAGTGATTTGTTAAAAGCTTGTGCAAGT
TCAGATGGAATAACACTAAGAAGAATAATGCAACCTTGGATGTCATTTGAATTTTTATTT
AAAATTTCTCAACTTTCAAAAGATGTTAAGAGAATTTTTGGACCAATTTATTCAGCTGTT
GATAAAATTTTAGAACAAAATGAACATTTGAGAATTGAAAGTGATGACAAAAAAGGAATT
TTCATTAAACAATTATTGAATTTAAAAAATGAATTCAGTGAAGAAGAAATTCGAGATGAA
ATTTTTATTTTAATTTTTGCTGGTTCTGAAACCACAGCAACAACGCTTTCAATGTGTCTT
CTTCTTCTAGCAATGCACAAAAATATTCAAAACAAAATTATTGAGGAAATTAACACCAAA
AATTCAAATGATGACTTTCCCTACATTGAAATGGTTCTTAAAGAAGTTATGAGACTTTTT
CCAATTGGTCCAATAATTTTTAGAGAAACAACAGCTGAAATAATGTTGGAAAGTTGTGAA
GTACCAAAAAACACTACAATAGCAATTCCAATTTATTTTCTTCATAGAAATGAAAATATT
TGGGGAAAAGATGCAAATGAATTTAAGCCAGAACGTTTTGAAGCTAATAAAATTGACAAA
ATTCATTCATATTCTTTTGTTCCATTCTCAGGTGGTAAAAGAATGTGCATTGGTTACAAA
TATGCAATGACTTTTATGAAAATTTTTATTGTAAATTTTTTCAAAGAATTTGAAATTGAA
ACAAGTTTAAAATATGAAGAAATGGATGTCAAAGTTCTTCCAACAATTACTGTAACTCAA
GGTTTTCCTATTAAAATAAAGAAACGAACAATTTGA
>g17840.t1 Gene=g17840 Length=471
MFLSLTFLASIFITIQFYKWIKFYLKISKIPGPKNQIPFFGIINNFIGEKVGNYGKNFLE
IISKTEPIQKVWFGPKIFIIPNTPEMFKTIFTSLYCVDKPRYIYGGFFANNGLLSSNGSV
QEKHRKILSYSMTPKMLNQLVPVFEEKIQKFIKRMKNKIDGDEFNVFEDVAACTLEALVK
GNFQYDYDCYESDLLKACASSDGITLRRIMQPWMSFEFLFKISQLSKDVKRIFGPIYSAV
DKILEQNEHLRIESDDKKGIFIKQLLNLKNEFSEEEIRDEIFILIFAGSETTATTLSMCL
LLLAMHKNIQNKIIEEINTKNSNDDFPYIEMVLKEVMRLFPIGPIIFRETTAEIMLESCE
VPKNTTIAIPIYFLHRNENIWGKDANEFKPERFEANKIDKIHSYSFVPFSGGKRMCIGYK
YAMTFMKIFIVNFFKEFEIETSLKYEEMDVKVLPTITVTQGFPIKIKKRTI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g17840.t1 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 15 | 471 | 1.4E-93 |
| 2 | g17840.t1 | PANTHER | PTHR24291:SF140 | CYTOCHROME P450 4C3-RELATED | 5 | 469 | 1.0E-74 |
| 3 | g17840.t1 | PANTHER | PTHR24291 | CYTOCHROME P450 FAMILY 4 | 5 | 469 | 1.0E-74 |
| 8 | g17840.t1 | PRINTS | PR00463 | E-class P450 group I signature | 276 | 293 | 2.4E-14 |
| 12 | g17840.t1 | PRINTS | PR00385 | P450 superfamily signature | 287 | 304 | 7.1E-13 |
| 7 | g17840.t1 | PRINTS | PR00463 | E-class P450 group I signature | 296 | 322 | 2.4E-14 |
| 5 | g17840.t1 | PRINTS | PR00463 | E-class P450 group I signature | 330 | 348 | 2.4E-14 |
| 11 | g17840.t1 | PRINTS | PR00385 | P450 superfamily signature | 331 | 342 | 7.1E-13 |
| 6 | g17840.t1 | PRINTS | PR00463 | E-class P450 group I signature | 406 | 416 | 2.4E-14 |
| 9 | g17840.t1 | PRINTS | PR00385 | P450 superfamily signature | 407 | 416 | 7.1E-13 |
| 4 | g17840.t1 | PRINTS | PR00463 | E-class P450 group I signature | 416 | 439 | 2.4E-14 |
| 10 | g17840.t1 | PRINTS | PR00385 | P450 superfamily signature | 416 | 427 | 7.1E-13 |
| 1 | g17840.t1 | Pfam | PF00067 | Cytochrome P450 | 31 | 442 | 3.8E-74 |
| 18 | g17840.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 17 | - |
| 19 | g17840.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 1 | - |
| 20 | g17840.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 2 | 13 | - |
| 22 | g17840.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 14 | 17 | - |
| 17 | g17840.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 18 | 280 | - |
| 21 | g17840.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 281 | 304 | - |
| 16 | g17840.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 305 | 471 | - |
| 14 | g17840.t1 | ProSitePatterns | PS00086 | Cytochrome P450 cysteine heme-iron ligand signature. | 409 | 418 | - |
| 13 | g17840.t1 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 30 | 469 | 4.98E-94 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed