Gene loci information

Transcript annotation

  • This transcript has been annotated as Inositol polyphosphate-5-phosphatase A.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1794 g1794.t1 TSS g1794.t1 13048676 13048676
chr_3 g1794 g1794.t1 isoform g1794.t1 13049132 13054182
chr_3 g1794 g1794.t1 exon g1794.t1.exon1 13049132 13049194
chr_3 g1794 g1794.t1 cds g1794.t1.CDS1 13049132 13049194
chr_3 g1794 g1794.t1 exon g1794.t1.exon2 13049698 13049928
chr_3 g1794 g1794.t1 cds g1794.t1.CDS2 13049698 13049928
chr_3 g1794 g1794.t1 exon g1794.t1.exon3 13051328 13051624
chr_3 g1794 g1794.t1 cds g1794.t1.CDS3 13051328 13051624
chr_3 g1794 g1794.t1 exon g1794.t1.exon4 13051686 13052216
chr_3 g1794 g1794.t1 cds g1794.t1.CDS4 13051686 13052216
chr_3 g1794 g1794.t1 exon g1794.t1.exon5 13052303 13053146
chr_3 g1794 g1794.t1 cds g1794.t1.CDS5 13052303 13053146
chr_3 g1794 g1794.t1 exon g1794.t1.exon6 13053896 13054182
chr_3 g1794 g1794.t1 cds g1794.t1.CDS6 13053896 13054182
chr_3 g1794 g1794.t1 TTS g1794.t1 NA NA

Sequences

>g1794.t1 Gene=g1794 Length=2253
ATGAATGCGAAAGCAATTGAATGTCTTCTGATCACAGCAAATTGTGGAAGTGTTTTTGAG
GACCCATCAAGGTTATTAAAAAATTGGATTGCCGAGTTTTTGTCACATGTAAAGAAATGC
AAGCCCGAATTTATTGCCCTTCATCTACAAGAAGTCGGTGGAAAGACTTATGACAAATCA
ATGGAATATGTGCAAGAGTTCATTAAAATTCTATGTGAATCAAAAGAGCTTGTGGAATAT
AACAAAATACGTGTCTTTCTTGATGAAGATTACAATTCAGCCGAACATTTTACAGCATTA
GGCAATTTATATTTTGCTCATGATTCAATCAAAAACATCAAAATTTGGAACTTTTTAACA
CACGAATTTGAGAGTGTTGAAGGGAAGACAATTCATACTGGAAACATTGAATCAGTTGCA
ACTAAAGAAAAAGCAAAGTTTCCACAAAACTTTTTCCCTGAATCTAAGTGGAGTAGAAAA
GGATTTCTTAGAACACGATTTTGTATTGAAGGCTCTACATTTGATTTAATCAACATTCAC
TTATTCCATGATGCGAGTAATTTTATAAGCTTTTCAGAGCAATATCCATCGGTTTATTGT
AAAAGCAGACGACGTGCATTGGCCTATGTATTAGAAAGAATTCATAAAGATCAACTCAAT
GTCTTAGTTCCATTCTTCATTTTTGGTGATTTCAATTTTCGATGTGATAATTTCGGTGTA
GTAAAAAAATTGACTGAAGATCTGATAGAGCAGCGAATTCCACATCTTAAAACAGATCAT
ACAAAAATTCAATATCGTGACACTGTTGGAAGTGTAAAATTTACATTGGCTAAAAAAGAA
TTTACCCATACGGATAATGAAATTTTCAAACAAGACTGGCTGAAAAAATTTGACCGTGAA
TTAGATCCACTGACTGAAATTCTTTATGAATATCCTATAACATTTTCACCAACATACCCA
TTTGAAGAAAATCCTGATTTACCAAGCAATTATATGCCTACACGTTGTCCTAGTTGGTGT
GATCGAATTTTAATGACAAAAGCTGCTAGAAATCTTATCCAAAATGAAGATGATAGTGAA
TATGGAATTATTGGTGAAGATATATGTATGGGAGACCATAAGCCGGTTTTCTTGAAATTA
CGTTTAAAAACAAATCAAGGTATAGTCAATAAATGTGATCACATAGAAAATCAACAAGAG
AGTTATAAAGAAAATTATTATTTAAATGAATCAAGCTCGAAGTTTGTAAATGTTTGTGAA
ATTTGTTTAAAACACTTAAATGCCATTATAATTGATACTGATAATACGATACCACTGCCA
CTTTCATCACAAGCATCCAAAAATAATCAAATAATGCCTTTAGTTAGTATAAATGTAATT
GACGATGAAAATTTAAATATTTGCATGTGTAATATAACTGATGATGGAATTTGTCCAAAT
TGCAAACAACAAAACGCAAATAAAAATCGAAAATTAGTTTCAAAACAAACAATGCTCGGT
GATGTGATTGTGAATCGAATTGATAGTCAATTTTTAAGTACTACATATTCATCTAGTCCA
TCTGAAATGAGAAAACTTAAAGATCCTTATACACCTGAAAGTGTTGAATCACATTCACCT
TTACCAGAAATGGATGAAAAAGAATTTGGGAATTTTATAAATAGTACGAGTGAGGATGAT
GAACTTCTTGAAAATATGCGAGACGTCATTAAACATAAACATTTGAGTGATCATAAAAGT
GTTGAATTAATTGATGAGACTGAAAAAATTGGCGTAGGAGATTTTCAAAATCAATATAAT
CTTAATCACACTGTGTCACCTAGTCAATTGCAGACACGACTAGAAATTCTCAGACGTGAA
TCCCAATTAGAATTTAGTTCGAAAAGTAGTAGTGGCAGTGGATCATCAAATTCAGAATCA
AATAAAAAAGAAAAATCTTCATTACATTCAAAATGTTGCTTGTGTTATGCTGTAATTGAA
AATCAAGTATGGAAAACTAAAATCAACCTACAAATCTTCCAAGAGTTGATGTCAGATTCA
GGCTGTAGCAAACACTGTCAAGTTGAATATAAAACGCGATACATAAAGTTTATTAAAAAC
TCAGAAATATGTTCTTCGAGTGATGTTGAGCATTGCGAAGAAGAAATTGAAGGAGAGCAA
GAAGATGCAAAACGAGAAGTTTCAACAGGTGGAAATTTGGATAAAAATAATGACTTATTA
ATTGAGCAAATTTTTTTAGAAACAACTGTTTGA

>g1794.t1 Gene=g1794 Length=750
MNAKAIECLLITANCGSVFEDPSRLLKNWIAEFLSHVKKCKPEFIALHLQEVGGKTYDKS
MEYVQEFIKILCESKELVEYNKIRVFLDEDYNSAEHFTALGNLYFAHDSIKNIKIWNFLT
HEFESVEGKTIHTGNIESVATKEKAKFPQNFFPESKWSRKGFLRTRFCIEGSTFDLINIH
LFHDASNFISFSEQYPSVYCKSRRRALAYVLERIHKDQLNVLVPFFIFGDFNFRCDNFGV
VKKLTEDLIEQRIPHLKTDHTKIQYRDTVGSVKFTLAKKEFTHTDNEIFKQDWLKKFDRE
LDPLTEILYEYPITFSPTYPFEENPDLPSNYMPTRCPSWCDRILMTKAARNLIQNEDDSE
YGIIGEDICMGDHKPVFLKLRLKTNQGIVNKCDHIENQQESYKENYYLNESSSKFVNVCE
ICLKHLNAIIIDTDNTIPLPLSSQASKNNQIMPLVSINVIDDENLNICMCNITDDGICPN
CKQQNANKNRKLVSKQTMLGDVIVNRIDSQFLSTTYSSSPSEMRKLKDPYTPESVESHSP
LPEMDEKEFGNFINSTSEDDELLENMRDVIKHKHLSDHKSVELIDETEKIGVGDFQNQYN
LNHTVSPSQLQTRLEILRRESQLEFSSKSSSGSGSSNSESNKKEKSSLHSKCCLCYAVIE
NQVWKTKINLQIFQELMSDSGCSKHCQVEYKTRYIKFIKNSEICSSSDVEHCEEEIEGEQ
EDAKREVSTGGNLDKNNDLLIEQIFLETTV

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g1794.t1 Gene3D G3DSA:3.60.10.10 - 1 418 1.2E-21
5 g1794.t1 MobiDBLite mobidb-lite consensus disorder prediction 521 540 -
1 g1794.t1 PANTHER PTHR12997:SF2 TYPE I INOSITOL 1,4,5-TRISPHOSPHATE 5-PHOSPHATASE 3 395 6.5E-166
2 g1794.t1 PANTHER PTHR12997 TYPE I INOSITOL-1,4,5-TRISPHOSPHATE 5-PHOSPHATASE 3 395 6.5E-166
4 g1794.t1 SMART SM00128 i5p_5 4 388 7.3E-58
3 g1794.t1 SUPERFAMILY SSF56219 DNase I-like 8 383 3.8E-35

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004445 inositol-polyphosphate 5-phosphatase activity MF
GO:0046856 phosphatidylinositol dephosphorylation BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values