General information for g1795.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Wiskott-Aldrich syndrome protein.
Parent gene
- The parent gene g1795 is located on chr_3: 13058912..13066148 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1795 | g1795.t3 | isoform | g1795.t3 | 13055641 | 13057099 |
| chr_3 | g1795 | g1795.t3 | exon | g1795.t3.exon1 | 13055641 | 13056799 |
| chr_3 | g1795 | g1795.t3 | cds | g1795.t3.CDS1 | 13056461 | 13056799 |
| chr_3 | g1795 | g1795.t3 | exon | g1795.t3.exon2 | 13057000 | 13057099 |
| chr_3 | g1795 | g1795.t3 | cds | g1795.t3.CDS2 | 13057000 | 13057098 |
| chr_3 | g1795 | g1795.t3 | TSS | g1795.t3 | NA | NA |
| chr_3 | g1795 | g1795.t3 | TTS | g1795.t3 | NA | NA |
Sequences
>g1795.t3 Gene=g1795 Length=1259
TAACGATATTTTGAATTTCAATTTTGAACCAATCTCTAATGTTCAAAGATTGAGGATCAA
AAATTTTCATTCACTTTTGTGTGTGCATTTTGTCGAAAAAAATTAAAATTTCTTAATTAA
GCAAACAAAATGCTATAATTGTGTCAAATTTTACTAATATATTGTGTAACTAATTATGAA
CAGAACAATGCAACTAAATGTTTAATTATAAGAGTCAAGAAAAAGATATAAAAATGAAGT
GAGATAGTGAATGATTAATTTTTTTGGAGTTTGAAAAAGAGTCAAAGAAGAAACAAGGCT
GAAATGAACAAAATGAGTCCACAACTGATAAGAAAGCTAAAGAGTTGGCGTTTATCACAA
AGCTAAAACAGGCAAATAGTTCATAAACTGTCCTGCAGTGATACACAACTCGACCAATAA
AATAATAGAATTGAAACAAACGAGACATTATATTGTTAAAGAATAAAATAAGGCCACGGC
AAAATAAAAGTAAAAAATATAAAAATTGTTATGAATGATGATGATGATGATGAACAGAGA
GAGAAAAACGCATGAGTGTTAAACAAGCTAAATGGAGAAAAGGCAGCAAATTGCAAAATC
ATTAAATTCAATTGTTGTTTGAAAGAGTTTTATCACTTGTTTCAAAATTGTTAAGTTATT
AAGCGTATTTTATATGGTGTGTAGTGTTTATTTGTGTCTATTGTGTTACCAATTAATTAT
TCGCGAGCGAGAAATTCAATGCATGCACAAAATTTTTAATTCGTTTGTATTTACGACAAT
TATTAGGAAGTTTATCAAAAGCAATTAAATGCAATAAAAAATGTCTGCAAATAGTGAAAA
TAGAAATTCAACAAAATTATCAAAGTCATCAACATATCTCTCTGGAGAAGAGAATGATCT
AGTATTTCGTCTTCTTGGAAGAAGATGTCAAAGCCAATGTACAACAGTAGCACAACTTTA
TCAAACAGAAGCTCCAACACATTGTCGCTGGGTGAAAAAGTACACGGGAGCATTATGTTT
TGTAAAGGACAATGCTAAGCGATCATATTATGCGCGACTATTTTGTCTCATAAAGCATGA
AATGATGTGGGAACAAGAAATGTATGACACTATTGAAATCAGCCGTGTTAAGCCTTACTT
ACTCACATTTGAAGGACAGGACGGTATGGTGGCATTGAATTTTGCATTTGAGGATGAGGC
CGAGACTTTTTTACATGTTGCAACAACAACTGTTCAAAATAGAAATAGACGGAGAGAAG
>g1795.t3 Gene=g1795 Length=146
MSANSENRNSTKLSKSSTYLSGEENDLVFRLLGRRCQSQCTTVAQLYQTEAPTHCRWVKK
YTGALCFVKDNAKRSYYARLFCLIKHEMMWEQEMYDTIEISRVKPYLLTFEGQDGMVALN
FAFEDEAETFLHVATTTVQNRNRRRE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g1795.t3 | CDD | cd01205 | EVH1_WASP-like | 40 | 141 | 0.000000 |
| 6 | g1795.t3 | Gene3D | G3DSA:2.30.29.30 | - | 4 | 146 | 0.000000 |
| 2 | g1795.t3 | PANTHER | PTHR23202:SF79 | WASP ACTIN NUCLEATION-PROMOTING FACTOR A-RELATED | 9 | 145 | 0.000000 |
| 3 | g1795.t3 | PANTHER | PTHR23202 | WASP INTERACTING PROTEIN-RELATED | 9 | 145 | 0.000000 |
| 1 | g1795.t3 | Pfam | PF00568 | WH1 domain | 29 | 133 | 0.000000 |
| 7 | g1795.t3 | ProSiteProfiles | PS50229 | WH1 domain profile. | 32 | 141 | 18.122000 |
| 5 | g1795.t3 | SMART | SM00461 | WH1_2 | 32 | 138 | 0.000032 |
| 4 | g1795.t3 | SUPERFAMILY | SSF50729 | PH domain-like | 28 | 140 | 0.000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003779 | actin binding | MF |
| GO:0007015 | actin filament organization | BP |
| GO:2000601 | positive regulation of Arp2/3 complex-mediated actin nucleation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
