Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1815 g1815.t3 isoform g1815.t3 13158146 13161363
chr_3 g1815 g1815.t3 exon g1815.t3.exon1 13158146 13158488
chr_3 g1815 g1815.t3 cds g1815.t3.CDS1 13158296 13158488
chr_3 g1815 g1815.t3 exon g1815.t3.exon2 13160396 13161019
chr_3 g1815 g1815.t3 cds g1815.t3.CDS2 13160396 13161019
chr_3 g1815 g1815.t3 exon g1815.t3.exon3 13161077 13161363
chr_3 g1815 g1815.t3 cds g1815.t3.CDS3 13161077 13161363
chr_3 g1815 g1815.t3 TTS g1815.t3 13161660 13161660
chr_3 g1815 g1815.t3 TSS g1815.t3 NA NA

Sequences

>g1815.t3 Gene=g1815 Length=1254
ATTGACATTTTAGTAGAAGATCTTGGTCTAACAGCAGTTCGTTCATCCTGTATATCCTCC
CTCACACATTCTGAAAAGCAACGATTAAATGTCGCTTGTCAACTTCTTACTCAATGTTCT
GTATTAGTTCTTGATCAAACAACCAATAACATGGATATTTTTGACACATTTTTTTTAGTT
GAATATTTACGACAATGGTGTAGCTCAAGAATTTGCATTATGACACTTCAACCACCAACT
TTTGAGATATTATCCATGTGTTCGGGTGTTTTGTTATTATCGGGCGGAAGAACTATTTTT
AGTGGTAATCGTGCTGATCTTCCAAGACACATGGGGCAATTAGATTTATATCCTTTTAAA
AATATTCTTATTATAGTGGATTTAGTTACATTAGATGATCTTTCGGCTGCTGCACTTTTA
GAATCATCAGCTCGAATTGAATCACTTGCAAATGCTTGGGATCGAATGAACTCCGAGCCT
CCACTTGCTGCTCCTCTCACGAGTCTCCCCGATCCTACAAAATCGGCTGGTGTGTTTAGA
CAAATTGGAACGTTATGCAAACGATATATTTCTTATAAACAGCCAGGATCATTATTAACT
TGGATAAGTAGATTAATTATTGCAGCAGTTTTATCACTTTGTCTAGGTGGTATTTTTTGG
GACATTCCATCAACAGATCCATTATTAACTTATAATGATAGACTTGGTTATCATCATACA
GTAATGACAATCACTTTATGGCCATTGTTACTGTTAATTATTAGAGATATTCAAGATGAT
AGACGACAAGCAGAGAAAGATATTCATTTGCAATTATATGGTAGAACTGTGTATATTTTT
GTGCAATCAATTCTCAGTGTTATTCCAAGTTTGTGCATATGGATAGCTTATCTACTTCCT
GCACATACTATGGCAGGCCTTTATGTTTACACTGCAAGTAATGATGCTGGAATTTATTTG
TATATGGGCTATATGATTTTATATTTAATGACTATGCAGACACTTGCATTGTTTGTATCA
CATTTCTTAGCGCCACGTAAAATAGTTGCTTCACTTTTTACGTTATTAATAATGCTCATT
GTTAATGTATCAGTTGGTGGATATTTTATTCATCCTTCGAATATACCTGAATTTATTAAA
TGGCTTGAATATGCATCTCCACAAAAATGGACACTTCCTCTCTTTGCAAAAGATGAATAT
AGTGATGAGACAATTGCTAATTCAGGAGCAATGCAGTTGTGTCGCAATAAACAT

>g1815.t3 Gene=g1815 Length=368
MDIFDTFFLVEYLRQWCSSRICIMTLQPPTFEILSMCSGVLLLSGGRTIFSGNRADLPRH
MGQLDLYPFKNILIIVDLVTLDDLSAAALLESSARIESLANAWDRMNSEPPLAAPLTSLP
DPTKSAGVFRQIGTLCKRYISYKQPGSLLTWISRLIIAAVLSLCLGGIFWDIPSTDPLLT
YNDRLGYHHTVMTITLWPLLLLIIRDIQDDRRQAEKDIHLQLYGRTVYIFVQSILSVIPS
LCIWIAYLLPAHTMAGLYVYTASNDAGIYLYMGYMILYLMTMQTLALFVSHFLAPRKIVA
SLFTLLIMLIVNVSVGGYFIHPSNIPEFIKWLEYASPQKWTLPLFAKDEYSDETIANSGA
MQLCRNKH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g1815.t3 PANTHER PTHR48041:SF89 FI03229P 1 356 8.2E-158
3 g1815.t3 PANTHER PTHR48041 ABC TRANSPORTER G FAMILY MEMBER 28 1 356 8.2E-158
1 g1815.t3 Pfam PF01061 ABC-2 type transporter 131 345 2.5E-16
14 g1815.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 32 -
19 g1815.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 33 50 -
9 g1815.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 51 147 -
21 g1815.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 148 170 -
13 g1815.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 171 189 -
20 g1815.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 190 207 -
11 g1815.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 208 226 -
17 g1815.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 227 248 -
15 g1815.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 249 267 -
18 g1815.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 268 289 -
10 g1815.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 290 297 -
16 g1815.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 298 320 -
12 g1815.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 321 368 -
8 g1815.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 148 170 -
7 g1815.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 185 204 -
6 g1815.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 225 247 -
5 g1815.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 267 289 -
4 g1815.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 298 320 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed