Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1815 g1815.t4 isoform g1815.t4 13160429 13161658
chr_3 g1815 g1815.t4 exon g1815.t4.exon1 13160429 13161019
chr_3 g1815 g1815.t4 cds g1815.t4.CDS1 13160518 13161019
chr_3 g1815 g1815.t4 exon g1815.t4.exon2 13161077 13161363
chr_3 g1815 g1815.t4 cds g1815.t4.CDS2 13161077 13161363
chr_3 g1815 g1815.t4 exon g1815.t4.exon3 13161431 13161658
chr_3 g1815 g1815.t4 cds g1815.t4.CDS3 13161431 13161658
chr_3 g1815 g1815.t4 TTS g1815.t4 13161660 13161660
chr_3 g1815 g1815.t4 TSS g1815.t4 NA NA

Sequences

>g1815.t4 Gene=g1815 Length=1106
TGGATTTAGTTACATTAGATGATCTTTCGGCTGCTGCACTTTTAGAATCATCAGCTCGAA
TTGAATCACTTGCAAATGCTTGGGATCGAATGAACTCCGAGCCTCCACTTGCTGCTCCTC
TCACGAGTCTCCCCGATCCTACAAAATCGGCTGGTGTGTTTAGACAAATTGGAACGTTAT
GCAAACGATATATTTCTTATAAACAGCCAGGATCATTATTAACTTGGATAAGTAGATTAA
TTATTGCAGCAGTTTTATCACTTTGTCTAGGTGGTATTTTTTGGGACATTCCATCAACAG
ATCCATTATTAACTTATAATGATAGACTTGGTTATCATCATACAGTAATGACAATCACTT
TATGGCCATTGTTACTGTTAATTATTAGAGATATTCAAGATGATAGACGACAAGCAGAGA
AAGATATTCATTTGCAATTATATGGTAGAACTGTGTATATTTTTGTGCAATCAATTCTCA
GTGTTATTCCAAGTTTGTGCATATGGATAGCTTATCTACTTCCTGCACATACTATGGCAG
GCCTTTATGTTTACACTGCAAGTAATGATGCTGGAATTTATTTGTATATGGGCTATATGA
TTTTATATTTAATGACTATGCAGACACTTGCATTGTTTGTATCACATTTCTTAGCGCCAC
GTAAAATAGTTGCTTCACTTTTTACGTTATTAATAATGCTCATTGTTAATGTATCAGTTG
GTGGATATTTTATTCATCCTTCGAATATACCTGAATTTATTAAATGGCTTGAATATGCAT
CTCCACAAAAATGGACACTTCCTCTCTTTGCAAAAGATGAATATAGTGATGAGACAATTG
CTAATTCAGGAGCAATGCAGTTGTGTCGCAATAAACATGTTCAACGGCAGGAAATTATCG
TTCAACAGCCATGCAAAATTAATGGTTCAGAGATTTTATTAGATTTTAGTCTTCAGCCTC
ATCAACATGTACTAGATTCTTCAGATATTTATATTTCAACATTAATTGGCATGCTCATCG
CATGCATTGGACTTTTCCTTTTAACAGCTATTTCATTCATTGCCAATATAAGTCGAATAT
TTAGAAATAAAAATAAGAGACGATAA

>g1815.t4 Gene=g1815 Length=338
MNSEPPLAAPLTSLPDPTKSAGVFRQIGTLCKRYISYKQPGSLLTWISRLIIAAVLSLCL
GGIFWDIPSTDPLLTYNDRLGYHHTVMTITLWPLLLLIIRDIQDDRRQAEKDIHLQLYGR
TVYIFVQSILSVIPSLCIWIAYLLPAHTMAGLYVYTASNDAGIYLYMGYMILYLMTMQTL
ALFVSHFLAPRKIVASLFTLLIMLIVNVSVGGYFIHPSNIPEFIKWLEYASPQKWTLPLF
AKDEYSDETIANSGAMQLCRNKHVQRQEIIVQQPCKINGSEILLDFSLQPHQHVLDSSDI
YISTLIGMLIACIGLFLLTAISFIANISRIFRNKNKRR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g1815.t4 PANTHER PTHR48041:SF89 FI03229P 3 333 4.0E-102
3 g1815.t4 PANTHER PTHR48041 ABC TRANSPORTER G FAMILY MEMBER 28 3 333 4.0E-102
1 g1815.t4 Pfam PF01061 ABC-2 type transporter 26 240 1.9E-16
11 g1815.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 42 -
22 g1815.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 43 65 -
16 g1815.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 66 84 -
20 g1815.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 85 102 -
13 g1815.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 103 121 -
19 g1815.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 122 143 -
14 g1815.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 144 162 -
21 g1815.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 163 184 -
12 g1815.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 185 192 -
17 g1815.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 193 215 -
15 g1815.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 216 299 -
18 g1815.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 300 328 -
10 g1815.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 329 338 -
8 g1815.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 43 65 -
5 g1815.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 80 99 -
6 g1815.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 120 142 -
9 g1815.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 162 184 -
4 g1815.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 193 215 -
7 g1815.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 305 327 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed