Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_3 | g1882 | g1882.t1 | isoform | g1882.t1 | 13641315 | 13642677 |
chr_3 | g1882 | g1882.t1 | exon | g1882.t1.exon1 | 13641315 | 13641381 |
chr_3 | g1882 | g1882.t1 | cds | g1882.t1.CDS1 | 13641315 | 13641381 |
chr_3 | g1882 | g1882.t1 | exon | g1882.t1.exon2 | 13641455 | 13641552 |
chr_3 | g1882 | g1882.t1 | cds | g1882.t1.CDS2 | 13641455 | 13641552 |
chr_3 | g1882 | g1882.t1 | exon | g1882.t1.exon3 | 13641612 | 13641746 |
chr_3 | g1882 | g1882.t1 | cds | g1882.t1.CDS3 | 13641612 | 13641746 |
chr_3 | g1882 | g1882.t1 | exon | g1882.t1.exon4 | 13641802 | 13641958 |
chr_3 | g1882 | g1882.t1 | cds | g1882.t1.CDS4 | 13641802 | 13641958 |
chr_3 | g1882 | g1882.t1 | exon | g1882.t1.exon5 | 13642223 | 13642677 |
chr_3 | g1882 | g1882.t1 | cds | g1882.t1.CDS5 | 13642223 | 13642677 |
chr_3 | g1882 | g1882.t1 | TSS | g1882.t1 | NA | NA |
chr_3 | g1882 | g1882.t1 | TTS | g1882.t1 | NA | NA |
>g1882.t1 Gene=g1882 Length=912
ATGAATCACTCAGAAATATTATCATTTCTTCTACTACTATTTTGTGTCTGTCAAAATTTC
ATTTCCGCATCACCACTTTTACCCTCCTCCTCATCATCAAATAATCGTCGTCGAACGCGT
TCGCAAATCGTAGCATGGAAACAGCCTGAAGATTATTGGAATATTACAAGCATTCCTAGA
AGTATTTTACCTCATTTAATTAATAAAAATTTGAGCCATACGCTGCCAGCACCAGCCAAT
ATTATTTTTAAAACTGTCGATGCCGATGAAAAAATATTAGAGAGATTTCATGAAATTAAG
AATAATATCACTGCAAGAACATTGTGGTCAAAAGCAGAAGCTGATCATCATTACTCGCCA
TTTTTCGATAAAGCACTGAAACTTATGAATCTCCAACAAGTCGCTTTTGAAATTGAAAAC
TCTGTGATGAGTAAAATGAGTTGTACAGCATGCAAAGCTGGAGCAACGCTACTTCAACAT
TATATAAAGTCTGGAAAGAGTAAAGAAGAAATCATTAAAACTATCTATCAATACTGCACA
AACCTACAAATTCAATCAGCTAGAGTTTGTGAAGGTGTCAGCAATCTCTTTGGTGGTGAA
GTTATTTACGTTCTCAAAAGAACAAACTTGGGTGCAGATGAGATTTGTAGTTTTATAATT
GGTGATGCATGCGGAGACATTTATAATCCTTATCATGAATGGGAAATTGAATTGCCTCCT
GTACCAAAGCCACAACCTCATGAACTACCAATACCAAAAGAAAATGCACCATCATTTAAA
GTTCTTCATTTGAGTGACACACATTTTGACCCTTATTATGAGGAAGGTAGTAATGCTGAC
TGTAATGAACCACTTTGCTGTAGAATAACTAATGGAAGACCAAGACATGTTAATGCGGCA
GCTGGAAAGTAA
>g1882.t1 Gene=g1882 Length=303
MNHSEILSFLLLLFCVCQNFISASPLLPSSSSSNNRRRTRSQIVAWKQPEDYWNITSIPR
SILPHLINKNLSHTLPAPANIIFKTVDADEKILERFHEIKNNITARTLWSKAEADHHYSP
FFDKALKLMNLQQVAFEIENSVMSKMSCTACKAGATLLQHYIKSGKSKEEIIKTIYQYCT
NLQIQSARVCEGVSNLFGGEVIYVLKRTNLGADEICSFIIGDACGDIYNPYHEWEIELPP
VPKPQPHELPIPKENAPSFKVLHLSDTHFDPYYEEGSNADCNEPLCCRITNGRPRHVNAA
AGK
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
8 | g1882.t1 | Gene3D | G3DSA:1.10.225.10 | Saposin | 141 | 226 | 9.9E-8 |
2 | g1882.t1 | PANTHER | PTHR10340 | SPHINGOMYELIN PHOSPHODIESTERASE | 130 | 303 | 2.8E-47 |
3 | g1882.t1 | PANTHER | PTHR10340:SF34 | SPHINGOMYELIN PHOSPHODIESTERASE | 130 | 303 | 2.8E-47 |
1 | g1882.t1 | Pfam | PF05184 | Saposin-like type B, region 1 | 147 | 182 | 1.3E-6 |
10 | g1882.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 23 | - |
11 | g1882.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 5 | - |
12 | g1882.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 6 | 17 | - |
13 | g1882.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 18 | 23 | - |
9 | g1882.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 24 | 303 | - |
15 | g1882.t1 | ProSiteProfiles | PS50015 | Saposin B type domain profile. | 144 | 228 | 12.591 |
14 | g1882.t1 | SMART | SM00741 | sapb_4 | 146 | 224 | 6.4E-11 |
5 | g1882.t1 | SUPERFAMILY | SSF47862 | Saposin | 145 | 227 | 2.22E-12 |
4 | g1882.t1 | SUPERFAMILY | SSF56300 | Metallo-dependent phosphatases | 250 | 290 | 7.4E-5 |
7 | g1882.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 23 | - |
6 | g1882.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 22 | - |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0006629 | lipid metabolic process | BP |
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.