General information for g1893.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as UDP-glucuronosyltransferase 2C1 .
Parent gene
- The parent gene g1893 is located on chr_3: 13716501..13726297 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1893 | g1893.t1 | TSS | g1893.t1 | 13716464 | 13716464 |
| chr_3 | g1893 | g1893.t1 | isoform | g1893.t1 | 13716501 | 13726297 |
| chr_3 | g1893 | g1893.t1 | exon | g1893.t1.exon1 | 13716501 | 13716653 |
| chr_3 | g1893 | g1893.t1 | cds | g1893.t1.CDS1 | 13716501 | 13716653 |
| chr_3 | g1893 | g1893.t1 | exon | g1893.t1.exon2 | 13716705 | 13716801 |
| chr_3 | g1893 | g1893.t1 | cds | g1893.t1.CDS2 | 13716705 | 13716801 |
| chr_3 | g1893 | g1893.t1 | exon | g1893.t1.exon3 | 13716891 | 13717076 |
| chr_3 | g1893 | g1893.t1 | cds | g1893.t1.CDS3 | 13716891 | 13717076 |
| chr_3 | g1893 | g1893.t1 | exon | g1893.t1.exon4 | 13717138 | 13717436 |
| chr_3 | g1893 | g1893.t1 | cds | g1893.t1.CDS4 | 13717138 | 13717436 |
| chr_3 | g1893 | g1893.t1 | exon | g1893.t1.exon5 | 13717494 | 13718145 |
| chr_3 | g1893 | g1893.t1 | cds | g1893.t1.CDS5 | 13717494 | 13718145 |
| chr_3 | g1893 | g1893.t1 | exon | g1893.t1.exon6 | 13718625 | 13719093 |
| chr_3 | g1893 | g1893.t1 | cds | g1893.t1.CDS6 | 13718625 | 13719093 |
| chr_3 | g1893 | g1893.t1 | exon | g1893.t1.exon7 | 13719153 | 13719396 |
| chr_3 | g1893 | g1893.t1 | cds | g1893.t1.CDS7 | 13719153 | 13719396 |
| chr_3 | g1893 | g1893.t1 | exon | g1893.t1.exon8 | 13719454 | 13719793 |
| chr_3 | g1893 | g1893.t1 | cds | g1893.t1.CDS8 | 13719454 | 13719793 |
| chr_3 | g1893 | g1893.t1 | exon | g1893.t1.exon9 | 13719848 | 13720225 |
| chr_3 | g1893 | g1893.t1 | cds | g1893.t1.CDS9 | 13719848 | 13720225 |
| chr_3 | g1893 | g1893.t1 | exon | g1893.t1.exon10 | 13726083 | 13726297 |
| chr_3 | g1893 | g1893.t1 | cds | g1893.t1.CDS10 | 13726083 | 13726297 |
| chr_3 | g1893 | g1893.t1 | TTS | g1893.t1 | NA | NA |
Sequences
>g1893.t1 Gene=g1893 Length=3033
ATGAAGAATTTCAAATTTTTATTATTATTGAATTTCCTTAACTATTTTGTTGTTGATTGT
GTAAAAATTCTTGCAATATTCACTATTCCATCAAAATCACATTCAATATTAGGATATGAA
TTGTTTAAAGAACTAGTTGCATCTGGTCATGAAGTTGTCGTTATCTCACCGGAAGGTAAT
GAATTGAAAAATCCACCTGCAAATTATACTAACATCGTTATTGGCAATGAAATTATTGAA
GAATATGAAAAAAATATCCACAATATGTTTAATGAAGTTGATGTGAATCCTTTATTTAAA
TTTTACGATATGCTTAAAAAAACTACTTTAGCTACTGAATTTATAATTAGGAATGAAAAA
ACTCAGGAACTTTTAAAATCAGACATCAAATTTGACTTGGTAATTTCAGAATTAGCACTT
AATGAAGCAGTGTTAGGTTTTTCTGAGTATTATAATTGTCCGCATGTTCTCATAACAACT
GTTGCATTATCTTCATGGATCGAAAAAATAACTACAAATCCATCACCTTATTCTTATGTT
CCACATATATTTCTTGATTTAACTGATCGAATGTCATTTTTTGGGCGACTTCAAAACACA
TTCTTTCATATTTTTGAAGATGTTTTCATGAAACTCTTTCATTACAATAAACATCAAAAA
ATTTATGAGACAGCTTTTCCAAATTCAAAAAACTTTCGACCATTTAAAGAGAAATTAAGA
AATGGTGTGTCATTGATACTCTTAAACAGTCATTACAGTATAAGCTTTCCACGACCTTAT
TTTCCCAATATCATTGAGGTTGCTGGAATGCACATAAAAAAGAATACTGACCATTTACCA
AACGATATAGAAAAATTCCTTAATGAATCAGGATCTGTAATTTATTTCTCTCTAGGAGGT
AATTTAAAACCATCAATAATGCCAAAAGAAAAGCAAGAGGCAATAATTAAATCTTTAACA
AAAGTAAATGCCAGAATTTTATGGAAATGGGATGATGAAAACGTGAAAGTGAATCAAAAT
AAATTTTTAGTAAGAAAATGGTTTCCACAAGATGATTTACTTGCACATTCTAAAATTAAA
TTGTTCATAACACATGGAGGTCTTTTGAGTGGAGTTGAAGCTATTTATTATGGGAAACCT
TTGATAGTCATACCAATATTTGGCGATCAAAAATTAAATGCTGCTCGAACAGAATTAAGT
GGATTTGGTTTGAGAATAGATTATAATAATTTAACGGAAGCATCACTTACATGGGCATTA
AATGAAATTCTCATGAACAGTAAATACAATTTAAGAGTAAAAGAACTGTCAAAGAGATTT
AAGGACAGACCAGAATATCCAGTTGATACAGCTAAATTCTACATTGAATATGTACTTAGG
CATAAAGGAGTTTTCCCTTATCCAAGTAAATCTCATTCAATTCTTGGACAAGAACTTTTC
AAAGAGCTTGCACAACGTGGTCATCAAGTAACTTTTTTAAGTCCATATCCTTTTAAAACT
AAATTTCATGAAAATTATAAAGATATCGCAATTAAGTCAAAAGAACTTTTTGATGCATTT
AATGAAGAACTCGAAGGATCTTTTGAAGCAACAAAATTAAATTTTTTTTCAATGCTCAAA
TATTGGATTGAAAATATCGCAAGAATGCAAGAATTTACACTAAGTGACCCAGCAGTTCAA
GAACTTTTAAAAAGTGATGAAAAATTTGATTTATGCGTAATCGAATTTTTAATGAACGAG
AGTTTACTCGGATTCGGAGGGCATTTTGGGTGTAAAATAATTGCAGTGAGCACATTAGGA
CAAGTAAAATATATCAATGATATGGTTCATAGTCCTATGCCATTATCAACTGTATGTCAT
CCGTTCCTGAGTTTCACTGATCGAATGAAATTCTCTCAACGATTTGAAAATGTTTTTACA
ACACTTTTTGAGGATACCATGTTTTATTTTTATCATTATCCACTTCAGAGTGCAATTTAC
GATAAATATTTTAAAAAAGATAAACCATCATTCAATCACATGTTAAAGCATTCGGTATCT
TTAGTTTTTCTTAACACTCATTATAGCTTAAATTATCCACAAGCATATCTTCCAAATATG
ATCGAAATTGGAGGATTTCATGTAAAAAACACAACTAATCCATTACCAAAAGATATTGAA
GATTTTATTGAATCAGCAAAAGAAGGAGTTATTTATTTTTCACTTGGTGGAAACTTAAGA
CCTTCAAAAATGAGTGCTGAAAAGAAGCAAACCATTATTTCAGCTTTTTCTAAACTTAAG
CAAAAGGTAATTTGGAAGTGGGACGAAGAGTTGAATGTTGATAAAAATAAATTTATGGTT
CGTAAATGGTTCCCACAAGATGATATTTTATCTCATAAAAATGTAAAATTATTCGTAACA
CATGGAGGATTATTAAGCGCCACAGAGGCAATTATACGAGAAAAACCGATACTAGGCATT
CCTATATTTGGTGATCAAATGATGAACATGGCACGAGCAGAGTTGCTTGGATGGGGTGTG
CAAGTAACATATCCTAATTTAACAGAAACTTCTTTAACATGGGCATTAAAGGAGGCTCTA
ACAAATAAAAAATATAAAGAAAATGTAATAAAAATTGCCGCACGATTACGTGATCAGCAA
AATTCACCAATGGATAAAGCAATTTATTGGACAGAATATGTGCTGCGTCATGAGGGTGCA
TATTTTATGCAAACATCAGCATCTTCATTGTCCTTCATTGAGTACAATAATTTAGATGTA
TATGCATTATTTGCATTTATCATTTTCACTGCATTCTTTTTGCCAATTTTAATTATAAAA
CAATCGTTCTCTAGAAAATCTGGAAAATCATCACAACAAAATTCAATTAATAATGATCAA
TCTCATAATCAAAATATTTCACAAGAACTTAAACATGCGATTGCAAATTTCATATACAAA
TATGGTGTGTCATTTCATTGTATTGAATTGGATTGCTTCAAAAAAATATTTGCTGTAATT
GATCCTGATTTGATAGATGCAATTCCTAATTGA
>g1893.t1 Gene=g1893 Length=1010
MKNFKFLLLLNFLNYFVVDCVKILAIFTIPSKSHSILGYELFKELVASGHEVVVISPEGN
ELKNPPANYTNIVIGNEIIEEYEKNIHNMFNEVDVNPLFKFYDMLKKTTLATEFIIRNEK
TQELLKSDIKFDLVISELALNEAVLGFSEYYNCPHVLITTVALSSWIEKITTNPSPYSYV
PHIFLDLTDRMSFFGRLQNTFFHIFEDVFMKLFHYNKHQKIYETAFPNSKNFRPFKEKLR
NGVSLILLNSHYSISFPRPYFPNIIEVAGMHIKKNTDHLPNDIEKFLNESGSVIYFSLGG
NLKPSIMPKEKQEAIIKSLTKVNARILWKWDDENVKVNQNKFLVRKWFPQDDLLAHSKIK
LFITHGGLLSGVEAIYYGKPLIVIPIFGDQKLNAARTELSGFGLRIDYNNLTEASLTWAL
NEILMNSKYNLRVKELSKRFKDRPEYPVDTAKFYIEYVLRHKGVFPYPSKSHSILGQELF
KELAQRGHQVTFLSPYPFKTKFHENYKDIAIKSKELFDAFNEELEGSFEATKLNFFSMLK
YWIENIARMQEFTLSDPAVQELLKSDEKFDLCVIEFLMNESLLGFGGHFGCKIIAVSTLG
QVKYINDMVHSPMPLSTVCHPFLSFTDRMKFSQRFENVFTTLFEDTMFYFYHYPLQSAIY
DKYFKKDKPSFNHMLKHSVSLVFLNTHYSLNYPQAYLPNMIEIGGFHVKNTTNPLPKDIE
DFIESAKEGVIYFSLGGNLRPSKMSAEKKQTIISAFSKLKQKVIWKWDEELNVDKNKFMV
RKWFPQDDILSHKNVKLFVTHGGLLSATEAIIREKPILGIPIFGDQMMNMARAELLGWGV
QVTYPNLTETSLTWALKEALTNKKYKENVIKIAARLRDQQNSPMDKAIYWTEYVLRHEGA
YFMQTSASSLSFIEYNNLDVYALFAFIIFTAFFLPILIIKQSFSRKSGKSSQQNSINNDQ
SHNQNISQELKHAIANFIYKYGVSFHCIELDCFKKIFAVIDPDLIDAIPN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 17 | g1893.t1 | CDD | cd03784 | GT1_Gtf-like | 22 | 447 | 5.19212E-58 |
| 18 | g1893.t1 | CDD | cd03784 | GT1_Gtf-like | 464 | 890 | 5.94626E-56 |
| 9 | g1893.t1 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 274 | 442 | 2.9E-42 |
| 10 | g1893.t1 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 460 | 699 | 3.6E-5 |
| 11 | g1893.t1 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 709 | 878 | 2.2E-42 |
| 3 | g1893.t1 | PANTHER | PTHR48043:SF10 | EG:EG0003.4 PROTEIN-RELATED | 29 | 463 | 3.9E-219 |
| 5 | g1893.t1 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 29 | 463 | 3.9E-219 |
| 4 | g1893.t1 | PANTHER | PTHR48043:SF10 | EG:EG0003.4 PROTEIN-RELATED | 466 | 926 | 3.9E-219 |
| 6 | g1893.t1 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 466 | 926 | 3.9E-219 |
| 2 | g1893.t1 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 33 | 463 | 5.4E-72 |
| 1 | g1893.t1 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 471 | 945 | 5.4E-76 |
| 12 | g1893.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 6 | - |
| 16 | g1893.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 27 | - |
| 14 | g1893.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 28 | 919 | - |
| 15 | g1893.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 920 | 939 | - |
| 13 | g1893.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 940 | 1010 | - |
| 21 | g1893.t1 | ProSitePatterns | PS00375 | UDP-glycosyltransferases signature. | 347 | 390 | - |
| 22 | g1893.t1 | ProSitePatterns | PS00375 | UDP-glycosyltransferases signature. | 783 | 826 | - |
| 8 | g1893.t1 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 22 | 463 | 1.64E-95 |
| 7 | g1893.t1 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 464 | 900 | 2.1E-97 |
| 19 | g1893.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 29 | - |
| 20 | g1893.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 920 | 939 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
