Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_3 | g1896 | g1896.t11 | TSS | g1896.t11 | 13734218 | 13734218 |
chr_3 | g1896 | g1896.t11 | isoform | g1896.t11 | 13734316 | 13736582 |
chr_3 | g1896 | g1896.t11 | exon | g1896.t11.exon1 | 13734316 | 13734388 |
chr_3 | g1896 | g1896.t11 | cds | g1896.t11.CDS1 | 13734316 | 13734388 |
chr_3 | g1896 | g1896.t11 | exon | g1896.t11.exon2 | 13734842 | 13735043 |
chr_3 | g1896 | g1896.t11 | cds | g1896.t11.CDS2 | 13734842 | 13735043 |
chr_3 | g1896 | g1896.t11 | exon | g1896.t11.exon3 | 13735198 | 13735345 |
chr_3 | g1896 | g1896.t11 | cds | g1896.t11.CDS3 | 13735198 | 13735243 |
chr_3 | g1896 | g1896.t11 | exon | g1896.t11.exon4 | 13735410 | 13736582 |
chr_3 | g1896 | g1896.t11 | TTS | g1896.t11 | 13736528 | 13736528 |
>g1896.t11 Gene=g1896 Length=1596
ATGAAGAACTATGGCATAGCTCTTGCTTTATTGTGCATTTTGAGTGCTCAATTAGTATAT
TCGGCTCCGAATACTATTGATTTATCAATGAATGTAGAACAAAAGGCACCTAAAGTTACC
ACTGAAGCTCCTATTGAAATTTCGGTTTCAATTATGACTTCAGAAACTCCAAAAAAAGAT
GAACAAGTTACACAGATCCCAATTGTTGTTGGAACTGAAATATCAGTAGTAAAGGATCAG
GAACAAAAATCAGTTGACGATAGTGACAACATTTCCTTCGACCACATCAACAACAAGTGT
TTCTCCTCCAAATTCCGATAATACAACAACTACAAGTACCACTACTTCAACCACCACAAC
AACAACACTTGCTCCTGTTCCAGATACTACAACCACTGCTCCAACTACATCCACGACACC
AACTCCTCTTCCAACAACTACAAAGCCAACTCCTGCACCAGACCATGATCGCTCGCAATT
TTCAGTTACTGCTTTCATTGGAGGAATGGTGTTTGCTTTTGGTATGATGGCAATTGGTTT
CATTGCTTTTAAGTTCTACAAGGCTCGAAATGAGCGTAATTATCACACTTTGTAAAGAGA
GCTAATCGGAATGGATTACACAACACCTTAATCCATTTTCAATGTAAGAAGCCATTTATT
AATCAATCTCAAGTGATTTTCCATCGAATATCTTACATATTTTCTTTTTAATCAAAACTT
AATAATCTCGTAATGCTTTTTATATATTTAAATTCTGTTTATTTTTTTAATTTGTCGTAT
GATAACGAGATTATCCTATTATTGAATTCTTTTAATATGTCACTATTTTCTAAACAGTTT
ATTCCTATCTAAAGAAATTACACTTACTTATCGATTAGATTTCTACGTAATATATCTCAT
TTACTTTATTTGATTGATGTTGCAATATAAGGCAGAAGAAAAGCAGCTGAACATAAATTT
TTCATATCATATAAAAATGTAATCTCAAAATTTAGTAGGAAGAACAAGAATAAATATGTA
AGTAATAAATACTATGCGTGTATGTAAAGATTATGAAAACGATAGCTATAAAATTCTGAA
ATGCTAAACTATAAGTAATAAGGCAGGTTCTGTTTCACCTAAGAAATAATCTGCTATTCA
AAATTGATAGCTTACTTGTGAAAATTAAGATTTTGCTATGGATAAGATATAATCGATGAT
TGTATGTGAAAAGATGCAATTAAAGCCATTAAATAAATATTATCTCTAATAAACCAAGTC
TGATTAAAAGATGGTAAAGAAAAATGTGAAGTGCTCTTTTAAAAATAAAATTCAAAAAAA
AAAAAATATTTATGACGAAATGATAAAAAATCTGAAATATTTAAAAGATTTTGAAAGAAA
TATAATAAAAAAGATGTAAATTTTAAATTGATTTATTTTTTCAATAATAATATTACCTAT
ATAACCATTAAGCTTTTTTGATGTGTAAAAGAATAATATTTAAGCGTTATAAATATATAA
CATACTTTAAGTCATGAATAAAGAAGTTAAAATAAAACAAGATTGGTAATTTTCAAAAGA
TTTTTCTCTTTTTTTCATATGTGTATGAAAAAATTT
>g1896.t11 Gene=g1896 Length=106
MKNYGIALALLCILSAQLVYSAPNTIDLSMNVEQKAPKVTTEAPIEISVSIMTSETPKKD
EQVTQIPIVVGTEISVVKDQEQKSVDDSDNISFDHINNKCFSSKFR
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
5 | g1896.t11 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 21 | - |
6 | g1896.t11 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 4 | - |
7 | g1896.t11 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 5 | 16 | - |
8 | g1896.t11 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 17 | 21 | - |
4 | g1896.t11 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 22 | 106 | - |
3 | g1896.t11 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 21 | - |
1 | g1896.t11 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 21 | - |
2 | g1896.t11 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 21 | - |
IUPRED3 score over 0.5 is predictive of a disordered region.
There are no GO annotations for this transcript.
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.