Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_3 | g1930 | g1930.t2 | TTS | g1930.t2 | 13954367 | 13954367 |
chr_3 | g1930 | g1930.t2 | isoform | g1930.t2 | 13954488 | 13955691 |
chr_3 | g1930 | g1930.t2 | exon | g1930.t2.exon1 | 13954488 | 13955234 |
chr_3 | g1930 | g1930.t2 | cds | g1930.t2.CDS1 | 13954488 | 13955234 |
chr_3 | g1930 | g1930.t2 | exon | g1930.t2.exon2 | 13955294 | 13955455 |
chr_3 | g1930 | g1930.t2 | cds | g1930.t2.CDS2 | 13955294 | 13955455 |
chr_3 | g1930 | g1930.t2 | exon | g1930.t2.exon3 | 13955511 | 13955691 |
chr_3 | g1930 | g1930.t2 | cds | g1930.t2.CDS3 | 13955511 | 13955546 |
chr_3 | g1930 | g1930.t2 | TSS | g1930.t2 | 13955886 | 13955886 |
>g1930.t2 Gene=g1930 Length=1090
ATGTCTAGTTTTAATGAAAATGAAGAGGAAGATGATAACTTTTTTAATAATGATGAATAT
GTTAAACCAAAAATATTACTCTTTGGTTTGCGAAGAAGTGGAAAGAGCTCAATTCAAAAA
GTAGTTTTTCACAAGATGAGTCCAAATGAAACCCTTTTTCTTGAATCTACAAATAAGGTT
TATTGTTAAAGAAGATATCAACAACTCAAGCTTTGTGCAATTTGAGATTTGGGATTTTCC
TGGTCAAATAGATTTCTTTGATCCTACATTCGATAGTGAACTCATTTTTGGAGACTGTGG
AGCATTAGTATTTGTGATCGATGCACAAGACGATTATCTAGAGGCTCTTTCAAAACTTAA
TCAAACAGTCACAAAGGCATATAAAGTGAATCCTAGAATTAAATTTGAAGTTTTTATTCA
TAAAGTTGATGGTGTGTCTGATGATTTCAAAATTGAATCACAACGTGACATTCATCAAAG
AGCTACAGATGACTTACAAGATGCTGGTTTAGATATTCATTTAAGCTTTCACCTCACATC
TATATATGATCATTCTATATTTGAAGCATTTAGTAAAGTTGTTCAGAAGTTGATTTCGCA
ATTACCAACACTTGAAAATCTCCTTAACATTTTGATTACTAATTCTGGAATTGAAAAGGC
CTTTTTGTTTGATGTTGTATCTAAAATTTATATTGCTACTGATTCTGCACCTGTTGATAT
GCAAACCTATGAACTCTGTTGCGATATGATCGATGTGGTTATTGATCTAAGTGACATTTA
TGGTGTATCAGCTGAAGAGAGAGCAAACCAAGAGCAAACAGCGTTTGATAATCTAAGTTC
ATCACTTATCAAGCTTAATAATTCAACAATTCTTTATCTCAAGGAAGTTAACAAATTTTT
GGCTCTTGTATGCATACTTCGCGAAGAAAATTTTACTCGACAAGGTGTAATTGATTATAA
TTTTCTTATTTTTCGTGAATCGATTGGTCGTGTTTTTGAGTTGAGATCGAAGAAATTAAA
AAGTAACAATGATGATTTAAGTGAAGATTATAATTATCAACAACCATCATCTGTTACTGA
TTCTGTTTAA
>g1930.t2 Gene=g1930 Length=314
MKPFFLNLQIRFIVKEDINNSSFVQFEIWDFPGQIDFFDPTFDSELIFGDCGALVFVIDA
QDDYLEALSKLNQTVTKAYKVNPRIKFEVFIHKVDGVSDDFKIESQRDIHQRATDDLQDA
GLDIHLSFHLTSIYDHSIFEAFSKVVQKLISQLPTLENLLNILITNSGIEKAFLFDVVSK
IYIATDSAPVDMQTYELCCDMIDVVIDLSDIYGVSAEERANQEQTAFDNLSSSLIKLNNS
TILYLKEVNKFLALVCILREENFTRQGVIDYNFLIFRESIGRVFELRSKKLKSNNDDLSE
DYNYQQPSSVTDSV
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
7 | g1930.t2 | CDD | cd11385 | RagC_like | 13 | 150 | 0 |
5 | g1930.t2 | Gene3D | G3DSA:3.40.50.300 | - | 3 | 151 | 0 |
6 | g1930.t2 | Gene3D | G3DSA:3.30.450.190 | - | 154 | 283 | 0 |
2 | g1930.t2 | PANTHER | PTHR11259:SF5 | RAS-RELATED GTP-BINDING PROTEIN D | 12 | 296 | 0 |
3 | g1930.t2 | PANTHER | PTHR11259 | RAS-RELATED GTP BINDING RAG/GTR YEAST | 12 | 296 | 0 |
1 | g1930.t2 | Pfam | PF04670 | Gtr1/RagA G protein conserved region | 14 | 202 | 0 |
4 | g1930.t2 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 17 | 155 | 0 |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0005525 | GTP binding | MF |
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed