General information for g1980.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative BAG domain-containing protein Samui.
Parent gene
- The parent gene g1980 is located on chr_3: 14180091..14180790 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1980 | g1980.t1 | TTS | g1980.t1 | 14178775 | 14178775 |
| chr_3 | g1980 | g1980.t1 | isoform | g1980.t1 | 14179547 | 14180790 |
| chr_3 | g1980 | g1980.t1 | exon | g1980.t1.exon1 | 14179547 | 14180649 |
| chr_3 | g1980 | g1980.t1 | cds | g1980.t1.CDS1 | 14179547 | 14180649 |
| chr_3 | g1980 | g1980.t1 | exon | g1980.t1.exon2 | 14180763 | 14180790 |
| chr_3 | g1980 | g1980.t1 | cds | g1980.t1.CDS2 | 14180763 | 14180790 |
| chr_3 | g1980 | g1980.t1 | TSS | g1980.t1 | 14181022 | 14181022 |
Sequences
>g1980.t1 Gene=g1980 Length=1131
ATGGAAAGAATTATTCCAATTTACGTTGAGGGTAGAGACGAGCCAATTGTAAATAAAGAT
CATAGTTCGTCTCAAAATAGCAATAGCGCACAAGCAACGGCATCTCAAAATTCTTCGAAT
AATTCTTCATCCTCCAACGCATTTGCATCAGCTGAGTCATCATCTGGACCTTTCCAACAG
CATTCACAAAATCCTTATTATGCTCATCAAAATCAAAACTTTCACCGTCCAACTATGGGC
TTTGATGATTTTAATGATATCCCAATGCCACATGGTTCAATTTTTGAGCGCGCTAAAGAT
TTTCCAGTTCGTTCAGATTTCAACGATTTTTTCAACGATTCACGTTTTCAACGACGAAGC
GAATCACCTATTAATCAACATCACTTTCAACAGCAGCAGCAACAGCAACCTAGAAAATCA
CCAAGTACTGGTAATTCAGGAGTTAAAACTTCAAACTCAGGAGATCGGCAGGTCCCAATT
CAGGTTCAGCATGAAAATGTAAAACGATCATCTACACCACAGAGGCAACAAACGCCCACA
CCTGCATCACAAGAACCAGTGGCACAACAAACAGCCGCACCACCTCCTCAACAAAATCAG
GAACAATGCGCTACGGCAGCTAAACAAAAAGCCATAGAAGATTCAATCACAAAAATTCAA
AAAATTCAACAATCTGTCTTAGAATTGATGAGTCGAGTTGAAAAGTACAATGGAACTGAT
CGAAAAGAATATCTTTATCTTGATGAAATGTTGACACAAAACTTGTTGAAATTGGATAAT
ATTGATGCAGAGGGGAAAGAAAATATCAAAAACGCTCGTCGTGAAGCGATAAAATGCATC
AATAGTCTTATATCACTCTTAGAAGCAAAAAAAGATGAAGCTGCTGCAGCTTCTGCAAAT
AATAATAATGATAATAATAATAGTACTAATGAAGTTGCAAATCAAAATAATGAAGAGGCT
AACACAAATGTAGAACAACAAATGCCTCCTACAGAAACAGTAAATGGAACTTCAAAGAAC
TCTTCATATGACAATGTGAACCAAATTCAACAAACCAGTGTGCCAGAAAAATCAGCTGAG
TCAAGCTTGGAAGAAAAAGTTGCAAACGCTTTAAATAAGCAAGAAGGATAG
>g1980.t1 Gene=g1980 Length=376
MERIIPIYVEGRDEPIVNKDHSSSQNSNSAQATASQNSSNNSSSSNAFASAESSSGPFQQ
HSQNPYYAHQNQNFHRPTMGFDDFNDIPMPHGSIFERAKDFPVRSDFNDFFNDSRFQRRS
ESPINQHHFQQQQQQQPRKSPSTGNSGVKTSNSGDRQVPIQVQHENVKRSSTPQRQQTPT
PASQEPVAQQTAAPPPQQNQEQCATAAKQKAIEDSITKIQKIQQSVLELMSRVEKYNGTD
RKEYLYLDEMLTQNLLKLDNIDAEGKENIKNARREAIKCINSLISLLEAKKDEAAAASAN
NNNDNNNSTNEVANQNNEEANTNVEQQMPPTETVNGTSKNSSYDNVNQIQQTSVPEKSAE
SSLEEKVANALNKQEG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g1980.t1 | Coils | Coil | Coil | 287 | 307 | - |
| 5 | g1980.t1 | Gene3D | G3DSA:1.20.58.120 | - | 182 | 298 | 8.2E-30 |
| 12 | g1980.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - |
| 14 | g1980.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 73 | - |
| 8 | g1980.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 73 | - |
| 11 | g1980.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 202 | - |
| 10 | g1980.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 202 | - |
| 9 | g1980.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 376 | - |
| 13 | g1980.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 358 | - |
| 2 | g1980.t1 | PANTHER | PTHR12329:SF5 | STARVIN, ISOFORM E | 11 | 327 | 1.7E-42 |
| 3 | g1980.t1 | PANTHER | PTHR12329 | BCL2-ASSOCIATED ATHANOGENE | 11 | 327 | 1.7E-42 |
| 1 | g1980.t1 | Pfam | PF02179 | BAG domain | 219 | 289 | 8.1E-17 |
| 15 | g1980.t1 | ProSiteProfiles | PS51035 | BAG domain profile. | 215 | 291 | 12.414 |
| 7 | g1980.t1 | SMART | SM00264 | BAG_1 | 215 | 291 | 1.4E-10 |
| 4 | g1980.t1 | SUPERFAMILY | SSF63491 | BAG domain | 199 | 294 | 1.83E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0051087 | chaperone binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
