Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable cytochrome P450 9f2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1984 g1984.t1 TTS g1984.t1 14190138 14190138
chr_3 g1984 g1984.t1 isoform g1984.t1 14190269 14192091
chr_3 g1984 g1984.t1 exon g1984.t1.exon1 14190269 14190446
chr_3 g1984 g1984.t1 cds g1984.t1.CDS1 14190269 14190446
chr_3 g1984 g1984.t1 exon g1984.t1.exon2 14190514 14190939
chr_3 g1984 g1984.t1 cds g1984.t1.CDS2 14190514 14190939
chr_3 g1984 g1984.t1 exon g1984.t1.exon3 14190999 14191593
chr_3 g1984 g1984.t1 cds g1984.t1.CDS3 14190999 14191593
chr_3 g1984 g1984.t1 exon g1984.t1.exon4 14191650 14191837
chr_3 g1984 g1984.t1 cds g1984.t1.CDS4 14191650 14191837
chr_3 g1984 g1984.t1 exon g1984.t1.exon5 14191892 14192091
chr_3 g1984 g1984.t1 cds g1984.t1.CDS5 14191892 14192091
chr_3 g1984 g1984.t1 TSS g1984.t1 14192165 14192165

Sequences

>g1984.t1 Gene=g1984 Length=1587
ATGCTTATAATAGTTTTGTTTTTGATCGCCATTTATCTAATATATAAATGGTCAATTTCA
ACATACGACTATTTTGAAAAACAAGGAATTCCTTATAATAAACCATTGCCACTCATTGGT
TCAAATAGAAATTTATTTTTCAACCGAAAAACATTCATTGAAGTTCTTCATAATTGGTTT
TATGAGTTCAAAGATGAAAAAGCTTCGGGTTTGTTTGAATTTCGTCGTCCCATTCTTTTA
CTTAAAGATCCAAAACTTATAAAGCAATTAGCTGTCAAAGATTTTGATTATTTTATGAAC
CATCGTACAATCATAACGGAAGATGTTGATCCACTTTTTGGTAAAAACCTTTTTGCTTTA
AAAGGAAATAAATGGAGAGATATGAGGGCAACTCTTTCGCCTGCTTTCACTGGTAGTAAA
ATGAGAAATATGATGGATTTTGTCAGCACAGTTGGACATCAAACAGCTGAAGCAATTAAA
AAAGATATAAAATCTGGTGGTGTTAATACATTTGAATTTAAAGAATTTGCATCGAAATTT
ACAATTGATATCATAGCTTCGACAGCTTTCGGGATAGAAATAAATTCATTTAAAAATCCT
ACAAATAAATTTTTCAAAGTTGCAAAAGAGATTACAAATTTCGCGTCATTTAAGACTGGT
CTCAAATTTGCTGGCTATCTTGCGTTTCCTAAACTAATGAAAATTCTTAAGATAAATCTT
CTTGATAAGAAAAGTTGCGACTTTTTCGAAGAAGCAATTTATGACACAATGAAGACACGT
GAGAAACATGGCATTGTGAGAAATGATATGATTCAACTTATGCTGCAAGCAAAAAATGGT
ATCTTATCTCATAATAATAATGTCGAAGAAAAAGTCATTGATGGATTTGCTACTGCTAAG
GAATCACAATTAGGAAAAAGTGAAGTAAAAAGAAAATGGGATGATGCAGATCTTGCTGCC
CAATGTTTTGTCTTCTTTCTTGCCGGTTTTGAAACAGTTGCACAAACAATGAGCTTTGTT
GGTTATGAGTTGGCATGCAATCCAGATGTGCAACAAAAACTTTTTGAAGAAATTTCGGAA
ATGAATGATGAAATCAATGGAAAAAAGATCAATTATGAACAAATTCAAAAAATGAAATAT
CTTGATGCAGTCATCTCTGAAACTTTGAGAAAATGGCCTGGCGCACCTGTAACAGATCGA
ATTTGTGTAAAAGACTATGAACTTAAATATGACAATAAATGCATTAAATTCGAAGCAAAT
AAAACAATCATGTTGATACCAATATGGAGCATTCATAGAGACCCAAAATATTATCAAAAT
CCTGATAAATTCGATCCGGAAAGATTCAATGATGAAAACAAAAAATTAATCGATCCTGAC
ACTTATTTGCCGTTTGGTGTTGGTCCTAGAAATTGCATTGGCAGTCGATTCGCATTAATG
GAAATCAAAACAATTTTCTATTACTTGCTTTTAAACTTTAGCATTGAAGTCACAGAAAAA
ACTCAAATTCCTCTTGAATTTGAAAAAACTCCATTCGCTATTAAACCAAAGAAAGGAATT
TGGGTTGAATTGAGACCACGCAATTAA

>g1984.t1 Gene=g1984 Length=528
MLIIVLFLIAIYLIYKWSISTYDYFEKQGIPYNKPLPLIGSNRNLFFNRKTFIEVLHNWF
YEFKDEKASGLFEFRRPILLLKDPKLIKQLAVKDFDYFMNHRTIITEDVDPLFGKNLFAL
KGNKWRDMRATLSPAFTGSKMRNMMDFVSTVGHQTAEAIKKDIKSGGVNTFEFKEFASKF
TIDIIASTAFGIEINSFKNPTNKFFKVAKEITNFASFKTGLKFAGYLAFPKLMKILKINL
LDKKSCDFFEEAIYDTMKTREKHGIVRNDMIQLMLQAKNGILSHNNNVEEKVIDGFATAK
ESQLGKSEVKRKWDDADLAAQCFVFFLAGFETVAQTMSFVGYELACNPDVQQKLFEEISE
MNDEINGKKINYEQIQKMKYLDAVISETLRKWPGAPVTDRICVKDYELKYDNKCIKFEAN
KTIMLIPIWSIHRDPKYYQNPDKFDPERFNDENKKLIDPDTYLPFGVGPRNCIGSRFALM
EIKTIFYYLLLNFSIEVTEKTQIPLEFEKTPFAIKPKKGIWVELRPRN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g1984.t1 Coils Coil Coil 358 378 -
14 g1984.t1 Gene3D G3DSA:1.10.630.10 Cytochrome p450 13 528 3.6E-135
2 g1984.t1 PANTHER PTHR24292 CYTOCHROME P450 3 518 5.1E-191
3 g1984.t1 PANTHER PTHR24292:SF90 CYTOCHROME P450 317A1-RELATED 3 518 5.1E-191
8 g1984.t1 PRINTS PR00463 E-class P450 group I signature 317 334 2.0E-20
11 g1984.t1 PRINTS PR00385 P450 superfamily signature 328 345 1.5E-11
7 g1984.t1 PRINTS PR00463 E-class P450 group I signature 337 363 2.0E-20
9 g1984.t1 PRINTS PR00385 P450 superfamily signature 383 394 1.5E-11
4 g1984.t1 PRINTS PR00463 E-class P450 group I signature 427 451 2.0E-20
6 g1984.t1 PRINTS PR00463 E-class P450 group I signature 462 472 2.0E-20
10 g1984.t1 PRINTS PR00385 P450 superfamily signature 463 472 1.5E-11
5 g1984.t1 PRINTS PR00463 E-class P450 group I signature 472 495 2.0E-20
12 g1984.t1 PRINTS PR00385 P450 superfamily signature 472 483 1.5E-11
1 g1984.t1 Pfam PF00067 Cytochrome P450 35 520 1.3E-85
17 g1984.t1 Phobius SIGNAL_PEPTIDE Signal peptide region 1 21 -
18 g1984.t1 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 1 -
19 g1984.t1 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 2 13 -
20 g1984.t1 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 14 21 -
16 g1984.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 22 528 -
21 g1984.t1 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 465 474 -
13 g1984.t1 SUPERFAMILY SSF48264 Cytochrome P450 30 527 5.76E-109

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values