General information for g2017.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Adipocyte-related X-chromosome expressed sequence 2.
Parent gene
- The parent gene g2017 is located on chr_3: 14464056..14464634 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2017 | g2017.t1 | TSS | g2017.t1 | 14463906 | 14463906 |
| chr_3 | g2017 | g2017.t1 | isoform | g2017.t1 | 14464056 | 14464634 |
| chr_3 | g2017 | g2017.t1 | exon | g2017.t1.exon1 | 14464056 | 14464288 |
| chr_3 | g2017 | g2017.t1 | cds | g2017.t1.CDS1 | 14464056 | 14464288 |
| chr_3 | g2017 | g2017.t1 | exon | g2017.t1.exon2 | 14464352 | 14464634 |
| chr_3 | g2017 | g2017.t1 | cds | g2017.t1.CDS2 | 14464352 | 14464634 |
| chr_3 | g2017 | g2017.t1 | TTS | g2017.t1 | 14464703 | 14464703 |
Sequences
>g2017.t1 Gene=g2017 Length=516
ATGCACAACTATTTTGATCGTATAAATAATGTCACTTCATTCTTTGTTACTATAACATTC
TTGATTATTCTTACTCTAATGAGTTCAACAATAGTATTTCCAAAGGATTTAGATGAAGAA
CCTATTTTATATTCAAATACTAATATGACCAAGAAGATCGCTACATTTACTGTAGTTTAT
TTTGATCTTGAAGCTGATTTCGAAGCTTTATTTAATTGGAATGTCAAACAATTGTTTATT
TACGTTTTTGCTGAATTTCAAAAGAGCAATGGAGTTCATGTGAACATGATGATTTGGGAT
AGAATTTTGCGTCGTGGTTCTACTGATAACTGGGTTAATTTAAAGAATGTACCAGCAAAA
TACTATCTTAATGACTTGAAGTATCTCTGCAGTAGTAATTTGACTCTGTCAGTTCATTGG
ATTTCAATTCCAACGGCTGGAGTATTTTATCCTTATAATCATAAAGAGAGTAGAATCACT
TTTCCACTACCTAATGATAAAACATGTTCAGCGTAA
>g2017.t1 Gene=g2017 Length=171
MHNYFDRINNVTSFFVTITFLIILTLMSSTIVFPKDLDEEPILYSNTNMTKKIATFTVVY
FDLEADFEALFNWNVKQLFIYVFAEFQKSNGVHVNMMIWDRILRRGSTDNWVNLKNVPAK
YYLNDLKYLCSSNLTLSVHWISIPTAGVFYPYNHKESRITFPLPNDKTCSA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g2017.t1 | PANTHER | PTHR12804:SF0 | SIGNAL PEPTIDASE COMPLEX SUBUNIT 3 | 1 | 165 | 8.4E-27 |
| 3 | g2017.t1 | PANTHER | PTHR12804 | MICROSOMAL SIGNAL PEPTIDASE 23 KD SUBUNIT SPC22/23 | 1 | 165 | 8.4E-27 |
| 8 | g2017.t1 | PIRSF | PIRSF016089 | SPC3 | 1 | 170 | 3.2E-28 |
| 1 | g2017.t1 | Pfam | PF04573 | Signal peptidase subunit | 6 | 162 | 7.8E-32 |
| 6 | g2017.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 11 | - |
| 7 | g2017.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 33 | - |
| 5 | g2017.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 34 | 171 | - |
| 4 | g2017.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 34 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016021 | integral component of membrane | CC |
| GO:0006465 | signal peptide processing | BP |
| GO:0005787 | signal peptidase complex | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed