General information for g2022.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2022 is located on chr_3: 14558249..14562080 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2022 | g2022.t3 | TTS | g2022.t3 | 14558176 | 14558176 |
| chr_3 | g2022 | g2022.t3 | isoform | g2022.t3 | 14558249 | 14560121 |
| chr_3 | g2022 | g2022.t3 | exon | g2022.t3.exon1 | 14558249 | 14558487 |
| chr_3 | g2022 | g2022.t3 | cds | g2022.t3.CDS1 | 14558439 | 14558487 |
| chr_3 | g2022 | g2022.t3 | exon | g2022.t3.exon2 | 14558543 | 14558661 |
| chr_3 | g2022 | g2022.t3 | cds | g2022.t3.CDS2 | 14558543 | 14558661 |
| chr_3 | g2022 | g2022.t3 | exon | g2022.t3.exon3 | 14558720 | 14560121 |
| chr_3 | g2022 | g2022.t3 | cds | g2022.t3.CDS3 | 14558720 | 14560021 |
| chr_3 | g2022 | g2022.t3 | TSS | g2022.t3 | NA | NA |
Sequences
>g2022.t3 Gene=g2022 Length=1760
GTATCAACGTGTCGACTATGTTCGAAAAGTGAAGCGCCTTAGATTGTACAGTCATTGTAT
TTATAGTGCTGGAACATCTCCAGCTGATAGCATCAACTATATGCCTCGTATACCAAGCAC
ATTTAGAATGAAACGATTCAATTCGTGGCCTAATCTTAAATTTTCTGATGTTGTCATTAA
GTCATCGAAATTTGATAAACAAAATGTTAGTGATCCACAACAATCATCTTCAGATGAAGC
GTTTAGTGCTGAATCACATTTCAATAAGAGAGCTGTGCAAAATGGGGATTCTAGTGCAAG
AAACGGAAGTATATTTAAAAAGATTCGGGAAGATCTAAAGTCAAAACCACTTGAAATTTT
ACAGAAAGTATCAAGTGGCACACAAACTTTAGAATACTGGCCTTCAGCTTCTGAATCAAT
GTTTTACAACATTTTTGAAAAAGAAATGAAAAAGAAGCAGATTGAAAATGAAATAGTAAC
GTTGACACAAACGACAACAACTACCACAACCACTACACTTGCTAAGTCATCAACAGAAGC
TTCAACTTCGGGAAATGTTGTCAATGCTGCTAGTACATCACCTAATGAAATGATTGACCA
ATATATTCAAACATCATTAAAAAGGAAAAACTCAAATGATTATCGTGATCATATCGAACT
TTTAGCCATTCAATTACAATTTGAGAAACATCGTCGTGAAATTCATGCTGAAAGGAATCG
ACGATTATTAGGAAAGAGTAGAGCTATGAGAGGACTTGAACAGTCAAATGCCACTCTCTC
GGATCAGGTTGCTAAATTATCAGCAGAAATAAATTTAATCAATAGAAAATCAGCAGAAAC
GAGAAGCATTAATCAGAAAAGTTTAAAAGATCTGGAGGAAAAAGCAAATTTTTGGGCGAA
GAAATGTGCTGAAGAAAAGGAGAAAAATGTTCAATTGCAGAGAGAAAGAGATTCTTTGCA
ACTAATGATTGAAGATGAGGTGGCACAAAAAAAGGAAGCTCTTAGCAAAATTGATGTGTT
GAGTGCCGAAAACTTTGATCTTAAGAATTTGTATGAAGATGCCAAAGCAGAAGCAGAACG
TGGTCAACAATATAGAGAACAATTGAAGAAGCTAGAAGCAGACATGATAATATTCAATGA
AGCAAGATTAAAATGTCAACAACAAATGGATGAATTAAATGCTATTAAAGAGAGAGATGT
TGAAATGGAAAATATTATACAAAGCTATAGTCAAGAAATTTTAGACATGAGACGCATTTT
AGATTTTAAATCTTCTCAAATTGATGGAATGACCAAAAGAATGAATGATTATGAGCTTCA
AATTCAAAAGAAAGATTCATCTCTGACAGATCTTAAGCGTAAAATGGAGACAATCAAAGA
AGTTTACGAAGAGAAATTTAAAGCTCTTGAAGAAAAATACACTAACCAAAAGGCAATTAT
AATGAAAATGGAAGAGCATGCTTTAGAGTTAAGTAAAAATCAACAGGGAATTACTTCACC
AGAAAGTGATAAGACAGGCATATCTTTTAGGGTACACATCACCATTATCAATATCGTTAG
CTTCAAGTGATGGTCTATCGGTTTCATTGCGTTCGACGACAGAATTAAGAGGTATTGGTA
TTCAACAAATAATGCAGCCATCAACATCAGGGGTTTCTTCTTTAGAGCAGCAAGCACAAC
AACAACCTGTACTTCAGCGTCAGCAATCGATTCATGACGATTCAACGCTTAATCAGCCAA
TAAATTATAAGAAGAAATAA
>g2022.t3 Gene=g2022 Length=489
MPRIPSTFRMKRFNSWPNLKFSDVVIKSSKFDKQNVSDPQQSSSDEAFSAESHFNKRAVQ
NGDSSARNGSIFKKIREDLKSKPLEILQKVSSGTQTLEYWPSASESMFYNIFEKEMKKKQ
IENEIVTLTQTTTTTTTTTLAKSSTEASTSGNVVNAASTSPNEMIDQYIQTSLKRKNSND
YRDHIELLAIQLQFEKHRREIHAERNRRLLGKSRAMRGLEQSNATLSDQVAKLSAEINLI
NRKSAETRSINQKSLKDLEEKANFWAKKCAEEKEKNVQLQRERDSLQLMIEDEVAQKKEA
LSKIDVLSAENFDLKNLYEDAKAEAERGQQYREQLKKLEADMIIFNEARLKCQQQMDELN
AIKERDVEMENIIQSYSQEILDMRRILDFKSSQIDGMTKRMNDYELQIQKKDSSLTDLKR
KMETIKEVYEEKFKALEEKYTNQKAIIMKMEEHALELSKNQQGITSPESDKTGISFRVHI
TIINIVSFK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g2022.t3 | Coils | Coil | Coil | 216 | 243 | - |
| 7 | g2022.t3 | Coils | Coil | Coil | 255 | 341 | - |
| 6 | g2022.t3 | Coils | Coil | Coil | 345 | 365 | - |
| 5 | g2022.t3 | Coils | Coil | Coil | 401 | 446 | - |
| 3 | g2022.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 65 | - |
| 2 | g2022.t3 | PANTHER | PTHR15154 | HAMARTIN | 36 | 463 | 1.4E-47 |
| 1 | g2022.t3 | Pfam | PF04388 | Hamartin protein | 32 | 209 | 6.1E-9 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
