Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative WASH complex subunit 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2031 g2031.t2 TSS g2031.t2 14589258 14589258
chr_3 g2031 g2031.t2 isoform g2031.t2 14589335 14591180
chr_3 g2031 g2031.t2 exon g2031.t2.exon1 14589335 14590456
chr_3 g2031 g2031.t2 cds g2031.t2.CDS1 14589335 14590456
chr_3 g2031 g2031.t2 exon g2031.t2.exon2 14590521 14591180
chr_3 g2031 g2031.t2 cds g2031.t2.CDS2 14590521 14591180
chr_3 g2031 g2031.t2 TTS g2031.t2 NA NA

Sequences

>g2031.t2 Gene=g2031 Length=1782
ATGAATTTTCAAAGTAATGCAGATAATAAAGCTGCTGACGATCTGTTAAAAAAATTTTCA
AAATTCATCAGATCATATAAAGAAACGACTGGAAAGTTGATAAACGAAAAATCTTACAAT
GAAAAATTTTTTCAACTCAAGTCTGATCCAAATTCCGAAAATGTGTCAGTCTTTCAATTA
CTTGAGTCTGAAAATAAACTGCTCACTAAATGTATGATTGTATTTTATCATCTCAACAAA
GAGGCTAGAAAGTTAATCAAACATTCCAAAATAATTGCAAATAAGCTGATTGTAATTGAA
GATGAAATCATCAGTGTAAGTGAGGCATCAACTGAAGCTAGTGAAGAAAATGCTTTAGTA
AAATTTAGTTACTCATTAGAGGATCTCTTTGACATGAAATTTCTTGTTCAAAACGCCATC
TTCTTATCAGTCAATGTGTTCCAGCAATATTGTGCGCTCTTTTCTATGGAAAAATTGCTT
CAAATCACACCATCATCAATTTTTCCATCAAATATTGATGATGTGTTATTATTACTGAGA
AATCTTGTGATCTTTGACATGATTTTTCAAAATAGACTTTTTAAAAATTATTTGGGTCTC
TATAGTGATCTCTTACTACAACAACAAAGTGATGACGAAAGGCATATCAATTTACAAAAT
ACCATTCATGAGATTGACTTATTAATTGATGGAAATATTTTCAATATAGCACTTGACAAT
ATAGTTGCGGTCAAGAACAAAATAAAGGCAAGGAATTTAAAACAATTAGAAAATTTTATG
TTGACACATATTAAGAATTTGATATATGGTATAAATATTCTTGGCAATAATCTCTCTGAA
TTGAATGACATTGACGAGTTGATGAAACTTAATATTGCCGTTATCGTCTATCAAAGGATT
TTTCAGAATTTAGATCAAAAACATATGAGACTTGTATCTGACATAAATTATAAATATCCC
GCAATTGTAATTCATGGTAATATCATGTTAAATGGAAATGAATTCCTTAAACGTTATCTG
CAACTTGAGAAGAACAATGTTGACATTGAGAAACTTCAGCAAAGTTATCTGAAACAAAGG
GTCGATGAAATTAATAAAGATACGTTGCAATATTCTAATCAAGTATTTTTATGGGTACTA
CAACTTCATCAACAATCAAAATTTGGTAATGAAAATTTAAATGAAGAGATGCTGAAAAAT
AGATGTGAATTATATTATCAAGGTTTAACACTTGCTGGAGAAATCAGTTTTATTATCAAA
ACCATCGTCAATTTGCACGCAAAACTTGGTCAACTTATATCAAAACCACTTGTTTCTAAC
ATTTATAAATTGACAGAAAATTTGCAGTTGATAAAATCTACTTATGAAGAAAAATCAAAA
TTCATCAGTGATTCGATCTCTTTTGTATTTCGATATCTGCAATTCCATACATTAAATGTG
ATTGGCTTGTGCAAAAAGAAAGTAATTATCGATGCAAAAAAGGAGCGAAAATTTGATCTT
TCAACAACACTTGTACTAATTGAGAAGTTGCTATATGCAAGCATGTCAATCAATAATTTG
AGTGCCATCACACTTGCATTGAATTTAACAGAGCCGTTTAAAAACTTTGGCCATGAATAT
TCAATAAGATTGATAAAACTTTTAGATCACATGATGACACTTTGTCGATTAGAGGAAAAT
TTAGAGAAAGTATGCGACACATCATTCCTGTTCTGGCATCAAAACTTATGTCAAACTTTT
TTCAAACAACATATGGAGACAACACTCGATGAACGAAAAATA

>g2031.t2 Gene=g2031 Length=594
MNFQSNADNKAADDLLKKFSKFIRSYKETTGKLINEKSYNEKFFQLKSDPNSENVSVFQL
LESENKLLTKCMIVFYHLNKEARKLIKHSKIIANKLIVIEDEIISVSEASTEASEENALV
KFSYSLEDLFDMKFLVQNAIFLSVNVFQQYCALFSMEKLLQITPSSIFPSNIDDVLLLLR
NLVIFDMIFQNRLFKNYLGLYSDLLLQQQSDDERHINLQNTIHEIDLLIDGNIFNIALDN
IVAVKNKIKARNLKQLENFMLTHIKNLIYGINILGNNLSELNDIDELMKLNIAVIVYQRI
FQNLDQKHMRLVSDINYKYPAIVIHGNIMLNGNEFLKRYLQLEKNNVDIEKLQQSYLKQR
VDEINKDTLQYSNQVFLWVLQLHQQSKFGNENLNEEMLKNRCELYYQGLTLAGEISFIIK
TIVNLHAKLGQLISKPLVSNIYKLTENLQLIKSTYEEKSKFISDSISFVFRYLQFHTLNV
IGLCKKKVIIDAKKERKFDLSTTLVLIEKLLYASMSINNLSAITLALNLTEPFKNFGHEY
SIRLIKLLDHMMTLCRLEENLEKVCDTSFLFWHQNLCQTFFKQHMETTLDERKI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g2031.t2 Coils Coil Coil 591 594 -
2 g2031.t2 PANTHER PTHR31409 WASH COMPLEX SUBUNIT 4 13 591 4.5E-61
1 g2031.t2 Pfam PF14745 WASH complex subunit 7, N-terminal 26 568 1.3E-61

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0071203 WASH complex CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed