General information for g2119.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial.
Parent gene
- The parent gene g2119 is located on chr_3: 15329895..15331211 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2119 | g2119.t2 | TTS | g2119.t2 | 15329858 | 15329858 |
| chr_3 | g2119 | g2119.t2 | isoform | g2119.t2 | 15329895 | 15331211 |
| chr_3 | g2119 | g2119.t2 | exon | g2119.t2.exon1 | 15329895 | 15331211 |
| chr_3 | g2119 | g2119.t2 | cds | g2119.t2.CDS1 | 15329895 | 15331211 |
| chr_3 | g2119 | g2119.t2 | TSS | g2119.t2 | 15331229 | 15331229 |
Sequences
>g2119.t2 Gene=g2119 Length=1317
ATGTCAACGACAAAAATTTTTCTAATTTCACGTAATTATTCAACTCAATCGAGCAGAAGA
GTAGTAGTTACGGGATTAGGAGTTGTTTCTGCATTAGGACAAACAGTAGATACAGCATGG
AAATCAATATTAGAAGGCAAAAGTGCGATAAAAAATCTTCCTGATACAGAAGAATATTCA
AAGTTGCCATGCAAAGTTGCTGCATCAATTAATTCAGAAGCTGTTGATAAGATTCGATCA
ACTTTCTCAAAAACAGAATTAAAAACAATGTCACCAGCCATAGTTTATGCAATGGATGCA
GCAAAACAAGCATTTGAAACTGCAAATTTCACACCAAAAACACCACAAGAGCAGCAAAGA
ACTGGATGTGCAGTGGGTATGGGAATGGTCGACTTAGCAGACATTTGTGAAACAAATGAC
TGTTTAAAAAAATCATATAACAAAATAAGTCCATTTTTTGTGCCTCGTATATTGTTAAAT
ATGGCAGCGGGACAAATTAGTATTGCATACAAATTACAAGGGCCAAATCATGCTGTTTCA
ACAGCTTGTGCCACTGGTTTGCATGCTATTGGTGATGCATTTAGGTTTATCAAATATAAT
GATGCTGATGTGATGGTTTGTGGTGCAACAGAAGCTTGTATAAGTCCTTTATCGATAGCT
GGATTTTGTAGATTGAAAGCATTATCAACATCTTTTAATGATAAACCGATTGAAGCATCA
AGACCATTTGATAAAAAGAGAGATGGTTTTGTGATGGGTGAAGGTGCATGCATTTTTATC
ATTGAAGAACTAGAACATGCATTAAAAAGAAATGCAACAATCTATGGAGAAGTTCTTGGC
TATGGATTATCAGGTGATGGTTCGCATTTGACTGCACCAAGCGAAGATGGATTAGGAGCA
AGATTAGCGATGGAACGTGCTTTAAAAGATGCAAAATTAAATCCTTCTGATATATCTTAT
GTGAATGCCCATGCAACTTCAACTCCACTTGGTGATTCAATTGAAGCGCGGGCGATACAA
TCAATTTTCGGAAGCAATGAAAAACTTGCAATAAGTTCAACGAAAGGATCTCATGGTCAT
TTATTAGGTGCAGCTGGAACACTAGAATGTTTATTTACTCTCTTAGCATGTCGTGATGGA
CTATTGCCTCCAACAATAAATTTTAATGAACCTGAAGATGAATTTAAAAATGTTAATTTT
GTACCAAATATATCACAAAAATGGGAAACGAGTAAACGAAGGGTAGCTGTAAAGAATAGC
TTTGGTTTTGGTGGAACGAATAGTTCTCTAATTGTAGGTGAATATCGTCATGTATAA
>g2119.t2 Gene=g2119 Length=438
MSTTKIFLISRNYSTQSSRRVVVTGLGVVSALGQTVDTAWKSILEGKSAIKNLPDTEEYS
KLPCKVAASINSEAVDKIRSTFSKTELKTMSPAIVYAMDAAKQAFETANFTPKTPQEQQR
TGCAVGMGMVDLADICETNDCLKKSYNKISPFFVPRILLNMAAGQISIAYKLQGPNHAVS
TACATGLHAIGDAFRFIKYNDADVMVCGATEACISPLSIAGFCRLKALSTSFNDKPIEAS
RPFDKKRDGFVMGEGACIFIIEELEHALKRNATIYGEVLGYGLSGDGSHLTAPSEDGLGA
RLAMERALKDAKLNPSDISYVNAHATSTPLGDSIEARAIQSIFGSNEKLAISSTKGSHGH
LLGAAGTLECLFTLLACRDGLLPPTINFNEPEDEFKNVNFVPNISQKWETSKRRVAVKNS
FGFGGTNSSLIVGEYRHV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g2119.t2 | CDD | cd00834 | KAS_I_II | 19 | 432 | 0.0 |
| 7 | g2119.t2 | Gene3D | G3DSA:3.40.47.10 | - | 8 | 276 | 6.4E-84 |
| 6 | g2119.t2 | Gene3D | G3DSA:3.40.47.10 | - | 281 | 438 | 2.4E-49 |
| 3 | g2119.t2 | PANTHER | PTHR11712:SF297 | 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE, MITOCHONDRIAL | 14 | 434 | 4.7E-180 |
| 4 | g2119.t2 | PANTHER | PTHR11712 | POLYKETIDE SYNTHASE-RELATED | 14 | 434 | 4.7E-180 |
| 8 | g2119.t2 | PIRSF | PIRSF000447 | KAS_II | 16 | 437 | 5.1E-165 |
| 2 | g2119.t2 | Pfam | PF00109 | Beta-ketoacyl synthase, N-terminal domain | 19 | 267 | 2.0E-59 |
| 1 | g2119.t2 | Pfam | PF02801 | Beta-ketoacyl synthase, C-terminal domain | 275 | 388 | 1.6E-36 |
| 10 | g2119.t2 | ProSitePatterns | PS00606 | Beta-ketoacyl synthases active site. | 174 | 190 | - |
| 11 | g2119.t2 | SMART | SM00825 | Beta-ketoacyl synthase | 21 | 437 | 2.3E-16 |
| 5 | g2119.t2 | SUPERFAMILY | SSF53901 | Thiolase-like | 14 | 432 | 5.61E-67 |
| 12 | g2119.t2 | TIGRFAM | TIGR03150 | fabF: beta-ketoacyl-acyl-carrier-protein synthase II | 19 | 432 | 7.5E-154 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016746 | acyltransferase activity | MF |
| GO:0004315 | 3-oxoacyl-[acyl-carrier-protein] synthase activity | MF |
| GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | MF |
| GO:0006633 | fatty acid biosynthetic process | BP |
KEGG
Orthology
- This transcript has been annotated with K09458 (3-oxoacyl-[acyl-carrier-protein] synthase II)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
