General information for g2141.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative mRNA cap guanine-N7 methyltransferase.
Parent gene
- The parent gene g2141 is located on chr_3: 15567005..15567827 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2141 | g2141.t3 | TTS | g2141.t3 | 15566287 | 15566287 |
| chr_3 | g2141 | g2141.t3 | isoform | g2141.t3 | 15566457 | 15567005 |
| chr_3 | g2141 | g2141.t3 | exon | g2141.t3.exon1 | 15566457 | 15566506 |
| chr_3 | g2141 | g2141.t3 | cds | g2141.t3.CDS1 | 15566457 | 15566506 |
| chr_3 | g2141 | g2141.t3 | exon | g2141.t3.exon2 | 15566567 | 15567005 |
| chr_3 | g2141 | g2141.t3 | cds | g2141.t3.CDS2 | 15566567 | 15566993 |
| chr_3 | g2141 | g2141.t3 | TSS | g2141.t3 | 15567895 | 15567895 |
Sequences
>g2141.t3 Gene=g2141 Length=489
GCAAAAGACATCATGAAGCGTCAACGTGCTGCACAATCAGATTCTTTTGGAAATGATGTT
TTTAATATAAAATTTTTGTCAGACCCAGATGATCTCCCAATATTTGGGGCAAAATATAAT
TTTCATTTAGATGGTGTTGTTGATTGTCCAGAGTTTCTTGTCTATTTTCCCGCGTTTGTT
AAACTTGCTAAACGTTATAATTTAAAACTTATTGAGAATGTTCGGTTTGAAGATTATTTT
CAAATGAAAATTGGGAAGGGAAGGGGGTTGATTGAAAAAATGCAAGCTGCAGAACGATTT
AGTCTTAATGGTAATCGTAATTTATCAAGGTCTAATGAAGAAGAATATAAACATGCAAAA
GATTTTCTACTTCAAAAAGGTGGATATGAAAATCGACGTAAATGTGGAACGCTTTCTGCA
TCTGAATGGGAAGCAGCATCTCTATATATGACATTTGCCTTTCAAAAGGTAAAAGGACCA
ATTGAATGA
>g2141.t3 Gene=g2141 Length=158
MKRQRAAQSDSFGNDVFNIKFLSDPDDLPIFGAKYNFHLDGVVDCPEFLVYFPAFVKLAK
RYNLKLIENVRFEDYFQMKIGKGRGLIEKMQAAERFSLNGNRNLSRSNEEEYKHAKDFLL
QKGGYENRRKCGTLSASEWEAASLYMTFAFQKVKGPIE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g2141.t3 | PANTHER | PTHR12189 | MRNA GUANINE-7- METHYLTRANSFERASE | 5 | 153 | 0.000 |
| 3 | g2141.t3 | PANTHER | PTHR12189:SF2 | MRNA CAP GUANINE-N7 METHYLTRANSFERASE | 5 | 153 | 0.000 |
| 1 | g2141.t3 | Pfam | PF03291 | mRNA capping enzyme | 2 | 153 | 0.000 |
| 4 | g2141.t3 | ProSiteProfiles | PS51562 | mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56) domain profile. | 1 | 158 | 26.376 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004482 | mRNA (guanine-N7-)-methyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
