Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative mRNA cap guanine-N7 methyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2141 g2141.t4 TTS g2141.t4 15566287 15566287
chr_3 g2141 g2141.t4 isoform g2141.t4 15566457 15567827
chr_3 g2141 g2141.t4 exon g2141.t4.exon1 15566457 15566506
chr_3 g2141 g2141.t4 exon g2141.t4.exon2 15566567 15567005
chr_3 g2141 g2141.t4 cds g2141.t4.CDS1 15566950 15567005
chr_3 g2141 g2141.t4 exon g2141.t4.exon3 15567274 15567488
chr_3 g2141 g2141.t4 cds g2141.t4.CDS2 15567274 15567488
chr_3 g2141 g2141.t4 exon g2141.t4.exon4 15567550 15567827
chr_3 g2141 g2141.t4 cds g2141.t4.CDS3 15567550 15567827
chr_3 g2141 g2141.t4 TSS g2141.t4 15567895 15567895

Sequences

>g2141.t4 Gene=g2141 Length=982
ATGGAAGAATCTATTGTTGCAAGTGATGAAGAATATTTGACAGAAGAGGAAGAACAGCCA
GAACAGAGAGGAATTAAGCGAAAACATGAAGATGACGAAGACGACGAAAGAGAGCAAATA
AATCAAGATGATGAGCAAGAAGGCGGCACTCAAAGTACGAGTCACGATAATTCAATAGTG
GTTGCAAATCATTATAATAAATTACAAGAGAAAGGATTGGCTGAAAGATTTAATTCGAAA
ATTTTCTATTTGAGAAATTTTAATAATTGGATAAAGAGTATGCTTATAAGCGATTATCTC
GAGAAAATTAAAGATTCTATGCAACATGGTTCTCCTTTAAGAGTGTTAGATATGTGTTGT
GGTAAAGGTGGTGATTTGTTAAAGTGGCATAAAGGAAGAATTACTTATTTAATCTGTACT
GATATTGCTGAGATTAGTATAGAACAGTGTCGTGCACGTTATGAAAAAATTACAGCTAAT
GATCCACCTGAACGCAAAAGACATCATGAAGCGTCAACGTGCTGCACAATCAGATTCTTT
TGGAAATGATGTTTTTAATATAAAATTTTTGTCAGACCCAGATGATCTCCCAATATTTGG
GGCAAAATATAATTTTCATTTAGATGGTGTTGTTGATTGTCCAGAGTTTCTTGTCTATTT
TCCCGCGTTTGTTAAACTTGCTAAACGTTATAATTTAAAACTTATTGAGAATGTTCGGTT
TGAAGATTATTTTCAAATGAAAATTGGGAAGGGAAGGGGGTTGATTGAAAAAATGCAAGC
TGCAGAACGATTTAGTCTTAATGGTAATCGTAATTTATCAAGGTCTAATGAAGAAGAATA
TAAACATGCAAAAGATTTTCTACTTCAAAAAGGTGGATATGAAAATCGACGTAAATGTGG
AACGCTTTCTGCATCTGAATGGGAAGCAGCATCTCTATATATGACATTTGCCTTTCAAAA
GGTAAAAGGACCAATTGAATGA

>g2141.t4 Gene=g2141 Length=182
MEESIVASDEEYLTEEEEQPEQRGIKRKHEDDEDDEREQINQDDEQEGGTQSTSHDNSIV
VANHYNKLQEKGLAERFNSKIFYLRNFNNWIKSMLISDYLEKIKDSMQHGSPLRVLDMCC
GKGGDLLKWHKGRITYLICTDIAEISIEQCRARYEKITANDPPERKRHHEASTCCTIRFF
WK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g2141.t4 CDD cd02440 AdoMet_MTases 114 172 0.00381862
8 g2141.t4 Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39 61 180 1.4E-36
6 g2141.t4 MobiDBLite mobidb-lite consensus disorder prediction 1 58 -
7 g2141.t4 MobiDBLite mobidb-lite consensus disorder prediction 1 17 -
5 g2141.t4 MobiDBLite mobidb-lite consensus disorder prediction 18 35 -
2 g2141.t4 PANTHER PTHR12189 MRNA GUANINE-7- METHYLTRANSFERASE 33 160 1.9E-38
3 g2141.t4 PANTHER PTHR12189:SF2 MRNA CAP GUANINE-N7 METHYLTRANSFERASE 33 160 1.9E-38
1 g2141.t4 Pfam PF03291 mRNA capping enzyme 50 161 2.1E-40
9 g2141.t4 ProSiteProfiles PS51562 mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56) domain profile. 40 182 29.505
4 g2141.t4 SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases 80 156 3.38E-10

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004482 mRNA (guanine-N7-)-methyltransferase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed