Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock protein 83.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2254 g2254.t12 TSS g2254.t12 16306870 16306870
chr_3 g2254 g2254.t12 isoform g2254.t12 16306986 16308049
chr_3 g2254 g2254.t12 exon g2254.t12.exon1 16306986 16307017
chr_3 g2254 g2254.t12 exon g2254.t12.exon2 16307303 16308049
chr_3 g2254 g2254.t12 cds g2254.t12.CDS1 16307344 16308048
chr_3 g2254 g2254.t12 TTS g2254.t12 16308052 16308052

Sequences

>g2254.t12 Gene=g2254 Length=779
TCATAAAAGCAGAAAATCAAAAAGAAAAGTGAAAGCAGAAGTTTTCCAATTTCAAGCTGA
AATAGCTCAGCTTATGTCACTTATTATCAACACCTTTTATTCAAACAAGGAGATTTTCTT
GCGTGAATTGATCTCAAATTCATCTGATGCTCTCGATAAAATCCGTTATGAATCACTCAC
TGAACCTTCAAAATTGGATTCAGGAAAGGAACTTTTTATTAAGATTATTCCAAACAAAGA
GGCCCGTACTTTGACAATTATCGATACTGGTATTGGTATGACAAAGTCTGATCTCGTAAA
CAATCTTGGAACAATCGCTCGCTCAGGCACAAAAGCCTTTATGGAAGCTTTACAAGCTGG
CGCTGATATCTCTATGATTGGTCAATTTGGTGTCGGTTTCTATTCTGCATACTTGGTTGC
TGACAAAGTCACAGTTCACTCAAAGAACAACGATGATGAGCAATATGTTTGGGAATCATC
AGCTGGTGGTAGTTTTACAATTGCAGTTGATGAAGGTGAGCCATTAGGTCGTGGTACAAA
GATTGTTTTGCACATTAAAGAAGATCAGACTGAATACTTGGAAGAGTCAAAGATCAAGTC
GATTGTCACAAAACACTCACAATTCATTGGCTATCCAATTAAATTGCTCGTTGAAAAAGA
ACGCGAGAAGGAAGTTAGTGATGATGAAGCTGAACCAGAAGAAGACAAAGAAAAGAAAGA
AGGTGATGAGCCTAAGATTGAAGATGTTGGTGATGATGAAGATGCAGATAAGGCTGATA

>g2254.t12 Gene=g2254 Length=235
MSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTEPSKLDSGKELFIKIIPNKEARTL
TIIDTGIGMTKSDLVNNLGTIARSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVT
VHSKNNDDEQYVWESSAGGSFTIAVDEGEPLGRGTKIVLHIKEDQTEYLEESKIKSIVTK
HSQFIGYPIKLLVEKEREKEVSDDEAEPEEDKEKKEGDEPKIEDVGDDEDADKAD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g2254.t12 CDD cd16927 HATPase_Hsp90-like 1 185 4.41339E-114
12 g2254.t12 Gene3D G3DSA:3.30.565.10 - 1 193 6.9E-99
13 g2254.t12 Gene3D G3DSA:3.30.70.2140 - 194 233 6.9E-99
17 g2254.t12 MobiDBLite mobidb-lite consensus disorder prediction 196 235 -
3 g2254.t12 PANTHER PTHR11528:SF79 HEAT SHOCK PROTEIN HSP 90-BETA-RELATED 1 232 1.0E-122
4 g2254.t12 PANTHER PTHR11528 HEAT SHOCK PROTEIN 90 FAMILY MEMBER 1 232 1.0E-122
10 g2254.t12 PRINTS PR00775 90kDa heat shock protein signature 10 32 1.1E-72
9 g2254.t12 PRINTS PR00775 90kDa heat shock protein signature 59 76 1.1E-72
8 g2254.t12 PRINTS PR00775 90kDa heat shock protein signature 77 94 1.1E-72
5 g2254.t12 PRINTS PR00775 90kDa heat shock protein signature 102 124 1.1E-72
6 g2254.t12 PRINTS PR00775 90kDa heat shock protein signature 153 170 1.1E-72
7 g2254.t12 PRINTS PR00775 90kDa heat shock protein signature 171 189 1.1E-72
2 g2254.t12 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 11 164 2.8E-15
1 g2254.t12 Pfam PF00183 Hsp90 protein 167 233 3.0E-14
15 g2254.t12 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 9 18 -
16 g2254.t12 SMART SM00387 HKATPase_4 11 165 1.9E-8
11 g2254.t12 SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1 197 5.63E-71

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006457 protein folding BP
GO:0005524 ATP binding MF
GO:0051082 unfolded protein binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed