Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock protein 83.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2254 g2254.t21 TSS g2254.t21 16306870 16306870
chr_3 g2254 g2254.t21 isoform g2254.t21 16307377 16308055
chr_3 g2254 g2254.t21 exon g2254.t21.exon1 16307377 16308055
chr_3 g2254 g2254.t21 cds g2254.t21.CDS1 16307548 16308054
chr_3 g2254 g2254.t21 TTS g2254.t21 16308052 16308052

Sequences

>g2254.t21 Gene=g2254 Length=679
AAGGAGATTTTCTTGCGTGAATTGATCTCAAATTCATCTGATGCTCTCGATAAAATCCGT
TATGAATCACTCACTGAACCTTCAAAATTGGATTCAGGAAAGGAACTTTTTATTAAGATT
ATTCCAAACAAAGAGGCCCGTACTTTGACAATTATCGATACTGGTATTGGTATGACAAAG
TCTGATCTCGTAAACAATCTTGGAACAATCGCTCGCTCAGGCACAAAAGCCTTTATGGAA
GCTTTACAAGCTGGCGCTGATATCTCTATGATTGGTCAATTTGGTGTCGGTTTCTATTCT
GCATACTTGGTTGCTGACAAAGTCACAGTTCACTCAAAGAACAACGATGATGAGCAATAT
GTTTGGGAATCATCAGCTGGTGGTAGTTTTACAATTGCAGTTGATGAAGGTGAGCCATTA
GGTCGTGGTACAAAGATTGTTTTGCACATTAAAGAAGATCAGACTGAATACTTGGAAGAG
TCAAAGATCAAGTCGATTGTCACAAAACACTCACAATTCATTGGCTATCCAATTAAATTG
CTCGTTGAAAAAGAACGCGAGAAGGAAGTTAGTGATGATGAAGCTGAACCAGAAGAAGAC
AAAGAAAAGAAAGAAGGTGATGAGCCTAAGATTGAAGATGTTGGTGATGATGAAGATGCA
GATAAGGCTGATAAGGAAA

>g2254.t21 Gene=g2254 Length=169
MTKSDLVNNLGTIARSGTKAFMEALQAGADISMIGQFGVGFYSAYLVADKVTVHSKNNDD
EQYVWESSAGGSFTIAVDEGEPLGRGTKIVLHIKEDQTEYLEESKIKSIVTKHSQFIGYP
IKLLVEKEREKEVSDDEAEPEEDKEKKEGDEPKIEDVGDDEDADKADKE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g2254.t21 Gene3D G3DSA:3.30.565.10 - 1 140 1.5E-56
9 g2254.t21 MobiDBLite mobidb-lite consensus disorder prediction 128 169 -
2 g2254.t21 PANTHER PTHR11528:SF79 HEAT SHOCK PROTEIN HSP 90-BETA-RELATED 1 167 6.7E-79
3 g2254.t21 PANTHER PTHR11528 HEAT SHOCK PROTEIN 90 FAMILY MEMBER 1 167 6.7E-79
4 g2254.t21 PRINTS PR00775 90kDa heat shock protein signature 9 26 2.3E-45
7 g2254.t21 PRINTS PR00775 90kDa heat shock protein signature 34 56 2.3E-45
5 g2254.t21 PRINTS PR00775 90kDa heat shock protein signature 85 102 2.3E-45
6 g2254.t21 PRINTS PR00775 90kDa heat shock protein signature 103 121 2.3E-45
1 g2254.t21 Pfam PF00183 Hsp90 protein 99 167 1.9E-14
8 g2254.t21 SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1 129 1.12E-41

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006457 protein folding BP
GO:0005524 ATP binding MF
GO:0051082 unfolded protein binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed