Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock protein 83.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2254 g2254.t25 isoform g2254.t25 16308352 16309500
chr_3 g2254 g2254.t25 exon g2254.t25.exon1 16308352 16308844
chr_3 g2254 g2254.t25 cds g2254.t25.CDS1 16308385 16308844
chr_3 g2254 g2254.t25 exon g2254.t25.exon2 16308908 16309408
chr_3 g2254 g2254.t25 cds g2254.t25.CDS2 16308908 16309408
chr_3 g2254 g2254.t25 exon g2254.t25.exon3 16309493 16309500
chr_3 g2254 g2254.t25 cds g2254.t25.CDS3 16309493 16309500
chr_3 g2254 g2254.t25 TTS g2254.t25 16309725 16309725
chr_3 g2254 g2254.t25 TSS g2254.t25 NA NA

Sequences

>g2254.t25 Gene=g2254 Length=1002
TGTGAAGATCTTATTCCAGATTATTTGAATTTCATGAAAGGTGTTGTTGACTCAGAAGAT
TTGCCATTGAACATTTCTCGTGAAATGTTGCAACAGAACAAGATTCTTAAAGTCATCCGC
AAAAATCTCGTTAAGAAATGCTTAGAATTATTCGAAGAATTAGCAGAAGATAAGGAAAAT
TACAAGAAATTCTATAGCCAATTCAGTAAAAACTTGAAATTAGGTGTTCATGAAGATTCA
ACAAATCGCGCAAAATTGGCTGATTTACTTCGCTTCCAAACATCTGCATCAGGTGATGAA
AGCTGCTCACTTGGCGATTATGTTGGTCGCATGAAGGAGAATCAAAAATCTATTTACTTC
ATTACTGGTGAGAGCAAAGAACAAGTAAGCAATTCAGCATTTGTTGAACGTGTCAAGAAA
CGTGGATTTGAAGTTGTTTACATGACTGAACCAATTGATGAATACGTCATTCAGCAACTT
AAAGAATATCAAGGCAAACAACTTGTTTGTGTAACAAAGGAAGGTCTTGAATTGCCAGAA
GATGAGGAAGAGAAGAAGAAGCGTGAAGAAGATAAGGCCAAATTCGAAAATCTCTGCAAA
GTCATGAAATCAGTTTTAGATAACAAAGTTGAAAAAGTTATTGTATCAAATCGTTTGGTA
GAATCACCATGCTGCATTGTCACATCTCAATATGGCTGGTCTGCTAATATGGAGCGTATC
ATGAAAGCACAAGCTCTACGTGATACAACAACAATGGGTTACATGGCTGGTAAAAAACAT
CTTGAAATCAATCCAGACCATCCAATCATCGAGACATTGCGTCAAAAGGCTGAAGCCGAC
AAGAACGATAAGGCTGTTAAAGATTTGTGCATTTTACTCTTCGAGACTTCATTACTAAGC
TCAGGTTTTTCACTTGATGAACCACAAGTTCATGCTGCTAGAATTTATCGTATGATCAAA
CTCGGTTTGGGAATTGATGAAGATGAACCAATGGTTGATTAA

>g2254.t25 Gene=g2254 Length=322
MKGVVDSEDLPLNISREMLQQNKILKVIRKNLVKKCLELFEELAEDKENYKKFYSQFSKN
LKLGVHEDSTNRAKLADLLRFQTSASGDESCSLGDYVGRMKENQKSIYFITGESKEQVSN
SAFVERVKKRGFEVVYMTEPIDEYVIQQLKEYQGKQLVCVTKEGLELPEDEEEKKKREED
KAKFENLCKVMKSVLDNKVEKVIVSNRLVESPCCIVTSQYGWSANMERIMKAQALRDTTT
MGYMAGKKHLEINPDHPIIETLRQKAEADKNDKAVKDLCILLFETSLLSSGFSLDEPQVH
AARIYRMIKLGLGIDEDEPMVD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g2254.t25 Gene3D G3DSA:3.30.230.80 - 1 75 0
6 g2254.t25 Gene3D G3DSA:3.40.50.11260 - 76 162 0
7 g2254.t25 Gene3D G3DSA:1.20.120.790 - 163 312 0
2 g2254.t25 PANTHER PTHR11528:SF79 HEAT SHOCK PROTEIN HSP 90-BETA-RELATED 2 317 0
3 g2254.t25 PANTHER PTHR11528 HEAT SHOCK PROTEIN 90 FAMILY MEMBER 2 317 0
1 g2254.t25 Pfam PF00183 Hsp90 protein 1 318 0
4 g2254.t25 SUPERFAMILY SSF54211 Ribosomal protein S5 domain 2-like 1 163 0
5 g2254.t25 SUPERFAMILY SSF110942 HSP90 C-terminal domain 186 308 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006457 protein folding BP
GO:0005524 ATP binding MF
GO:0051082 unfolded protein binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values