General information for g2285.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Molybdopterin synthase catalytic subunit 1.
Parent gene
- The parent gene g2285 is located on chr_3: 16486009..16486551 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2285 | g2285.t4 | TTS | g2285.t4 | 16485935 | 16485935 |
| chr_3 | g2285 | g2285.t4 | isoform | g2285.t4 | 16486009 | 16486551 |
| chr_3 | g2285 | g2285.t4 | exon | g2285.t4.exon1 | 16486009 | 16486337 |
| chr_3 | g2285 | g2285.t4 | cds | g2285.t4.CDS1 | 16486009 | 16486326 |
| chr_3 | g2285 | g2285.t4 | exon | g2285.t4.exon2 | 16486423 | 16486551 |
| chr_3 | g2285 | g2285.t4 | TSS | g2285.t4 | 16486913 | 16486913 |
Sequences
>g2285.t4 Gene=g2285 Length=458
ATGAATCATATAAAACTTACTTATGACAAGCTGGATCCAACTGAAATAAGTGAATTAGCA
GTTCATGAAAGTTGTGGAGCTGTTTCGTTATTTATAGGCACAACTCGTGATAACTTTGAC
GGCAAGCAGCATACGATGATATGGCAATTAAAATAATGAACAAAATATGTGATGAAATGC
GACTTTTTTGGCCAGATATAAAAAATATTTGTATTTATCATAGACTCGGTCTTGTTCCTG
TTAAAGAAGCTAGTGTTGTTATCGCTTGCAGCTCTCCACATAGAAATACAAGTCTTGAAG
CTCTTCCTTTTGCACTGAGAAATTTGAAACAATCAGTGCCTATATTCAAGCGTGAATACT
ACAAAGATAAAAATGGCTCAAGTGAATGGAAAGAAAATCCAGAATGTACCTGGTCAAAAA
AATATCAGCAGCAATTGATTAATAATAATTTAAATTGA
>g2285.t4 Gene=g2285 Length=105
MAIKIMNKICDEMRLFWPDIKNICIYHRLGLVPVKEASVVIACSSPHRNTSLEALPFALR
NLKQSVPIFKREYYKDKNGSSEWKENPECTWSKKYQQQLINNNLN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g2285.t4 | Gene3D | G3DSA:3.90.1170.40 | Molybdopterin synthase subunit MoaE | 1 | 98 | 0 |
| 2 | g2285.t4 | PANTHER | PTHR23404 | MOLYBDOPTERIN SYNTHASE RELATED | 1 | 95 | 0 |
| 3 | g2285.t4 | PANTHER | PTHR23404:SF2 | MOLYBDOPTERIN SYNTHASE CATALYTIC SUBUNIT | 1 | 95 | 0 |
| 1 | g2285.t4 | Pfam | PF02391 | MoaE protein | 1 | 64 | 0 |
| 4 | g2285.t4 | SUPERFAMILY | SSF54690 | Molybdopterin synthase subunit MoaE | 1 | 92 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006777 | Mo-molybdopterin cofactor biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed