Gene loci information

Transcript annotation

  • This transcript has been annotated as Molybdopterin synthase catalytic subunit 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2285 g2285.t5 TTS g2285.t5 16485935 16485935
chr_3 g2285 g2285.t5 isoform g2285.t5 16486009 16486551
chr_3 g2285 g2285.t5 exon g2285.t5.exon1 16486009 16486362
chr_3 g2285 g2285.t5 cds g2285.t5.CDS1 16486009 16486362
chr_3 g2285 g2285.t5 exon g2285.t5.exon2 16486423 16486551
chr_3 g2285 g2285.t5 cds g2285.t5.CDS2 16486423 16486551
chr_3 g2285 g2285.t5 TSS g2285.t5 16486913 16486913

Sequences

>g2285.t5 Gene=g2285 Length=483
ATGAATCATATAAAACTTACTTATGACAAGCTGGATCCAACTGAAATAAGTGAATTAGCA
GTTCATGAAAGTTGTGGAGCTGTTTCGTTATTTATAGGCACAACTCGTGATAACTTTGAC
GGCAAGCAGAAGGTCACTAAACTCGAGTATGAAGCATACGATGATATGGCAATTAAAATA
ATGAACAAAATATGTGATGAAATGCGACTTTTTTGGCCAGATATAAAAAATATTTGTATT
TATCATAGACTCGGTCTTGTTCCTGTTAAAGAAGCTAGTGTTGTTATCGCTTGCAGCTCT
CCACATAGAAATACAAGTCTTGAAGCTCTTCCTTTTGCACTGAGAAATTTGAAACAATCA
GTGCCTATATTCAAGCGTGAATACTACAAAGATAAAAATGGCTCAAGTGAATGGAAAGAA
AATCCAGAATGTACCTGGTCAAAAAAATATCAGCAGCAATTGATTAATAATAATTTAAAT
TGA

>g2285.t5 Gene=g2285 Length=160
MNHIKLTYDKLDPTEISELAVHESCGAVSLFIGTTRDNFDGKQKVTKLEYEAYDDMAIKI
MNKICDEMRLFWPDIKNICIYHRLGLVPVKEASVVIACSSPHRNTSLEALPFALRNLKQS
VPIFKREYYKDKNGSSEWKENPECTWSKKYQQQLINNNLN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g2285.t5 CDD cd00756 MoaE 11 139 0.00000
6 g2285.t5 Gene3D G3DSA:3.90.1170.40 Molybdopterin synthase subunit MoaE 1 141 0.00000
4 g2285.t5 Hamap MF_03052 Molybdopterin synthase catalytic subunit [cnxH]. 1 147 49.17824
2 g2285.t5 PANTHER PTHR23404 MOLYBDOPTERIN SYNTHASE RELATED 2 150 0.00000
3 g2285.t5 PANTHER PTHR23404:SF2 MOLYBDOPTERIN SYNTHASE CATALYTIC SUBUNIT 2 150 0.00000
1 g2285.t5 Pfam PF02391 MoaE protein 6 119 0.00000
5 g2285.t5 SUPERFAMILY SSF54690 Molybdopterin synthase subunit MoaE 3 147 0.00000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006777 Mo-molybdopterin cofactor biosynthetic process BP
GO:0005829 cytosol CC
GO:0030366 molybdopterin synthase activity MF
GO:0019008 molybdopterin synthase complex CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values