General information for g2313.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g2313 is located on chr_3: 16790868..16791431 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2313 | g2313.t2 | isoform | g2313.t2 | 16790601 | 16791431 |
| chr_3 | g2313 | g2313.t2 | exon | g2313.t2.exon1 | 16790601 | 16790767 |
| chr_3 | g2313 | g2313.t2 | TSS | g2313.t2 | 16790635 | 16790635 |
| chr_3 | g2313 | g2313.t2 | exon | g2313.t2.exon2 | 16790823 | 16791431 |
| chr_3 | g2313 | g2313.t2 | cds | g2313.t2.CDS1 | 16790868 | 16791431 |
| chr_3 | g2313 | g2313.t2 | TTS | g2313.t2 | 16791542 | 16791542 |
Sequences
>g2313.t2 Gene=g2313 Length=776
GTGTCGTTATTTCTTTTTTCAAATAGTTCAGCGCAACATTGCTGAATGTTTTGTTGTTGC
TTTAAATAAATATACTTCAAAATAAAAAATTCTTAAAAATCAATTACTCAAACACATATT
AAGACCTTTGTTAAATAATTGATCGCTTAAATAATTAATAAGCTACAGGTTTAAAATTTA
GTGAATCATCATTGTCAAAAATCACTTGTAAGATGGAAGCTCTTGATTTATTAGAGAAAA
GAATTGATGCATTGAGTAATGCTCTTGGTATTAATGATGAAGAGCAAAACACACTTAATG
AGAATCTAACTGATTCAATAATATCTGCAAATACTTTAATAACAAGTGCAACTAGCGGAC
GAGAGAAAGTTGGAGAAATGATGAAAAGGACGAAAGAATTAGAAAATTATCTTGATCCAG
ACTATATCAATGATCAACAAAGTATTAAAATTAAAGAAGCATATATCAACACAGTTGCTA
ATGATCTTGCAGCTAATTTTGAAACACTTCAGAAAATAAAATTACTTGAGCCGACACTCT
CTGCCGAATATTTTCGCAGCATTCCTGATGTTTCTGAAAAGATCAGAGACATGAATGAGC
AACTTTCGACTAGCCAACAACAAAACGAATTGATTGAAGAAAGTCTACTGATTTCTATGC
AGAAATATAGCGAGATTCAAAATAATTTGAGAGATGCATTGCAACAATTGAACGACAGGC
TTGACAAGTTTGAAGAACGAGTTGAAAATGCCAAAAAGAAGGCAATTCGCGAATAA
>g2313.t2 Gene=g2313 Length=187
MEALDLLEKRIDALSNALGINDEEQNTLNENLTDSIISANTLITSATSGREKVGEMMKRT
KELENYLDPDYINDQQSIKIKEAYINTVANDLAANFETLQKIKLLEPTLSAEYFRSIPDV
SEKIRDMNEQLSTSQQQNELIEESLLISMQKYSEIQNNLRDALQQLNDRLDKFEERVENA
KKKAIRE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g2313.t2 | Coils | Coil | Coil | 124 | 144 | - |
| 3 | g2313.t2 | Coils | Coil | Coil | 149 | 187 | - |
| 2 | g2313.t2 | PANTHER | PTHR28360 | DYNACTIN SUBUNIT 3 | 4 | 180 | 5.7E-29 |
| 1 | g2313.t2 | Pfam | PF07426 | Dynactin subunit p22 | 3 | 167 | 1.4E-24 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005869 | dynactin complex | CC |
| GO:0061640 | cytoskeleton-dependent cytokinesis | BP |
KEGG
Orthology
- This transcript has been annotated with K10425 (dynactin 3)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
