General information for g2335.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase.
Parent gene
- The parent gene g2335 is located on chr_3: 16892172..16892882 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2335 | g2335.t4 | isoform | g2335.t4 | 16891276 | 16892172 |
| chr_3 | g2335 | g2335.t4 | exon | g2335.t4.exon1 | 16891276 | 16891285 |
| chr_3 | g2335 | g2335.t4 | exon | g2335.t4.exon2 | 16891340 | 16891525 |
| chr_3 | g2335 | g2335.t4 | cds | g2335.t4.CDS1 | 16891509 | 16891525 |
| chr_3 | g2335 | g2335.t4 | exon | g2335.t4.exon3 | 16891592 | 16891842 |
| chr_3 | g2335 | g2335.t4 | cds | g2335.t4.CDS2 | 16891592 | 16891842 |
| chr_3 | g2335 | g2335.t4 | exon | g2335.t4.exon4 | 16891913 | 16892172 |
| chr_3 | g2335 | g2335.t4 | cds | g2335.t4.CDS3 | 16891913 | 16892172 |
| chr_3 | g2335 | g2335.t4 | TTS | g2335.t4 | 16892673 | 16892673 |
| chr_3 | g2335 | g2335.t4 | TSS | g2335.t4 | NA | NA |
Sequences
>g2335.t4 Gene=g2335 Length=707
CATATTACGAATATTTGTTAAAACAATGGCTTCAAATCGGGAAACAACCTGATCATTATT
TGATCGAAGACTACAAAGAAGCTATTGCTGGTGTTATTAAAAATTTAAGAAAAGAAACAC
CAAATGAACATCATATCTACATTGGTGAATTAATAAGTGGAAAAGACTTTAAACCCAAAA
TGGATCATTTAACATGTTATTTACCTGGAACGCTTTTACTTGGTTATAAAAACGGAATGC
CACAATCTCATTTTACCTTGGCAACTGAATTGTTAGAAACATGTTATCAAACATATATAA
AGCAACCAACAGGATTAGCTCCAGAAATTACTTATTTCAATCTTGAGGGAGAAAGCTCAA
CTGACATCTATGTTAAAGCTAACGATGCTCACAATCTCCAAAGACCGGAATTCATTGAAA
GTCTTTATTATTTCTATGCAATTACAGGTAATAAAACTTACCAAGACATGGGATGGAATA
TTTTTCAATCGTTTGAAAAATATACTCGTGTAAGTCATGGTTACACGTCAATTAACAATG
TAAGAAATGCAAAGGATGTCCGTCCAAAAGACATGATGGAAACTTTTTGGCTCGGAGAAA
CTTTGAAATATTTCTATCTTTTGTTTAGTGACGATCGTAATGAAATTGATTTAGATAAAT
TTATATTCAATACTGAAGCACATTTGATTCCTATTCGAGAAAACTGA
>g2335.t4 Gene=g2335 Length=175
MDHLTCYLPGTLLLGYKNGMPQSHFTLATELLETCYQTYIKQPTGLAPEITYFNLEGESS
TDIYVKANDAHNLQRPEFIESLYYFYAITGNKTYQDMGWNIFQSFEKYTRVSHGYTSINN
VRNAKDVRPKDMMETFWLGETLKYFYLLFSDDRNEIDLDKFIFNTEAHLIPIREN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g2335.t4 | Gene3D | G3DSA:1.50.10.10 | - | 1 | 175 | 0 |
| 2 | g2335.t4 | PANTHER | PTHR11742 | MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED | 1 | 174 | 0 |
| 3 | g2335.t4 | PANTHER | PTHR11742:SF55 | ENDOPLASMIC RETICULUM MANNOSYL-OLIGOSACCHARIDE 1,2-ALPHA-MANNOSIDASE | 1 | 174 | 0 |
| 5 | g2335.t4 | PRINTS | PR00747 | Glycosyl hydrolase family 47 signature | 73 | 97 | 0 |
| 4 | g2335.t4 | PRINTS | PR00747 | Glycosyl hydrolase family 47 signature | 135 | 155 | 0 |
| 1 | g2335.t4 | Pfam | PF01532 | Glycosyl hydrolase family 47 | 1 | 171 | 0 |
| 6 | g2335.t4 | SUPERFAMILY | SSF48225 | Seven-hairpin glycosidases | 1 | 174 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0005509 | calcium ion binding | MF |
| GO:0004571 | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
