General information for g2337.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein phosphatase 1B.
Parent gene
- The parent gene g2337 is located on chr_3: 16899941..16903773 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2337 | g2337.t6 | TTS | g2337.t6 | 16896666 | 16896666 |
| chr_3 | g2337 | g2337.t6 | isoform | g2337.t6 | 16896837 | 16899715 |
| chr_3 | g2337 | g2337.t6 | exon | g2337.t6.exon1 | 16896837 | 16897292 |
| chr_3 | g2337 | g2337.t6 | cds | g2337.t6.CDS1 | 16897223 | 16897292 |
| chr_3 | g2337 | g2337.t6 | exon | g2337.t6.exon2 | 16897364 | 16897466 |
| chr_3 | g2337 | g2337.t6 | cds | g2337.t6.CDS2 | 16897364 | 16897466 |
| chr_3 | g2337 | g2337.t6 | exon | g2337.t6.exon3 | 16899432 | 16899549 |
| chr_3 | g2337 | g2337.t6 | cds | g2337.t6.CDS3 | 16899432 | 16899549 |
| chr_3 | g2337 | g2337.t6 | exon | g2337.t6.exon4 | 16899606 | 16899715 |
| chr_3 | g2337 | g2337.t6 | cds | g2337.t6.CDS4 | 16899606 | 16899707 |
| chr_3 | g2337 | g2337.t6 | TSS | g2337.t6 | NA | NA |
Sequences
>g2337.t6 Gene=g2337 Length=787
GGGATGTGATGAGTAACGAGGCCGTCTGTAATTTTGTTCATAATCGCCTTCGAATTTCTG
ATGACTTGGTGTGGATTTGTAATCAAGTTATTGACACATGCTTGCACAAGGGTTCTCGCG
ATAATATGAGCATCATTCTAATAGTATTCCCCGGAGCGCCGAAACCTTCCAGTGAAGCTA
TTGAAGCAGAAGAGGAGCTTGAGAGGAATATACGTAAAACTATAAAAGAATTCACAGAAA
ATACGGAGGCTGCATACGATGTGAGTTCATTAATGCGCTTATTAGCCAGCAGTAACATTC
AGTGGCCGGAAGGTGGTGGTATAGAATCTAAATATAAACTTATTACGGAAGTATTTAAGG
AAATCTGTCCTGATCTCACTGATGCAGAATTCGAGTTTTAAAGAAAACCCTTTTTTACAA
TAGAATATTGATTATGATTTTCTTTGATAAAAAAAAACAACCTTTGATACAATTATTCAG
CCAAATAACTATTGGAACAATATTTCAAACTACTATTTCAAATGAAGAAGAAAATAAGAA
ATGAGTAAAAATGATATCCGTGATTACAAATGAAGTAGAAATAAGCTGTTCTAATTTCCA
TCTTAAAATATTGTACATAAATTTTACTTAAATTTCCTCTTAAATATTCTAATTTTGACG
ATTTTTTTTACAATGAAATTCTTTTCCATCAACTTTTTTTTTCTTAAAATAAAATCAAAT
TTACACTTTTACAAACATACGCCAGTTTCTATTTTATGCGTGTGTAATTAAATATTTAAT
GATGAGA
>g2337.t6 Gene=g2337 Length=130
MSNEAVCNFVHNRLRISDDLVWICNQVIDTCLHKGSRDNMSIILIVFPGAPKPSSEAIEA
EEELERNIRKTIKEFTENTEAAYDVSSLMRLLASSNIQWPEGGGIESKYKLITEVFKEIC
PDLTDAEFEF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g2337.t6 | Coils | Coil | Coil | 54 | 78 | - |
| 7 | g2337.t6 | Gene3D | G3DSA:3.60.40.10 | Phosphatase 2c; Domain 1 | 1 | 54 | 4.2E-11 |
| 6 | g2337.t6 | Gene3D | G3DSA:1.10.10.430 | Phosphatase 2C; domain 2 | 55 | 122 | 3.1E-14 |
| 2 | g2337.t6 | PANTHER | PTHR47992:SF121 | PROTEIN PHOSPHATASE 1A | 1 | 97 | 4.4E-17 |
| 3 | g2337.t6 | PANTHER | PTHR47992 | ALPHABET, ISOFORM E-RELATED | 1 | 97 | 4.4E-17 |
| 1 | g2337.t6 | Pfam | PF07830 | Protein serine/threonine phosphatase 2C, C-terminal domain | 41 | 117 | 4.7E-24 |
| 4 | g2337.t6 | SUPERFAMILY | SSF81606 | PP2C-like | 1 | 49 | 1.96E-9 |
| 5 | g2337.t6 | SUPERFAMILY | SSF81601 | Protein serine/threonine phosphatase 2C, C-terminal domain | 53 | 121 | 5.75E-12 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000287 | magnesium ion binding | MF |
| GO:0004721 | phosphoprotein phosphatase activity | MF |
| GO:0030145 | manganese ion binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
