General information for g2345.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG5065.
Parent gene
- The parent gene g2345 is located on chr_3: 16941171..16941985 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2345 | g2345.t1 | isoform | g2345.t1 | 16940043 | 16941985 |
| chr_3 | g2345 | g2345.t1 | exon | g2345.t1.exon1 | 16940043 | 16940489 |
| chr_3 | g2345 | g2345.t1 | cds | g2345.t1.CDS1 | 16940043 | 16940489 |
| chr_3 | g2345 | g2345.t1 | exon | g2345.t1.exon2 | 16940549 | 16940683 |
| chr_3 | g2345 | g2345.t1 | cds | g2345.t1.CDS2 | 16940549 | 16940683 |
| chr_3 | g2345 | g2345.t1 | exon | g2345.t1.exon3 | 16940791 | 16940908 |
| chr_3 | g2345 | g2345.t1 | cds | g2345.t1.CDS3 | 16940791 | 16940908 |
| chr_3 | g2345 | g2345.t1 | exon | g2345.t1.exon4 | 16940962 | 16941107 |
| chr_3 | g2345 | g2345.t1 | cds | g2345.t1.CDS4 | 16940962 | 16941107 |
| chr_3 | g2345 | g2345.t1 | exon | g2345.t1.exon5 | 16941171 | 16941333 |
| chr_3 | g2345 | g2345.t1 | cds | g2345.t1.CDS5 | 16941171 | 16941333 |
| chr_3 | g2345 | g2345.t1 | exon | g2345.t1.exon6 | 16941389 | 16941521 |
| chr_3 | g2345 | g2345.t1 | cds | g2345.t1.CDS6 | 16941389 | 16941521 |
| chr_3 | g2345 | g2345.t1 | exon | g2345.t1.exon7 | 16941576 | 16941833 |
| chr_3 | g2345 | g2345.t1 | cds | g2345.t1.CDS7 | 16941576 | 16941833 |
| chr_3 | g2345 | g2345.t1 | exon | g2345.t1.exon8 | 16941886 | 16941985 |
| chr_3 | g2345 | g2345.t1 | cds | g2345.t1.CDS8 | 16941886 | 16941985 |
| chr_3 | g2345 | g2345.t1 | TSS | g2345.t1 | NA | NA |
| chr_3 | g2345 | g2345.t1 | TTS | g2345.t1 | NA | NA |
Sequences
>g2345.t1 Gene=g2345 Length=1500
ATGTCTAAACAAATTTCAATTTCTGAATTTTATAGCAACAAATGTGTGTTTATAACAGGT
GGCACAGGATTTATTGGAAAAATTATTGTAGAGAAACTTTTAAGATCCTGTCCAGAAGTC
GACACAATTTACCTATTAGCTCGTCAAAAAAAGAATAAAAAAGCTTCAGAAAGAATTCAA
GAAATTACAAATTCTCCTCTTTTTGATGTCGTTCGTAAAAATAATTCAGAAGCATTCCAG
AAAATTTGTCTTATGGAAGGTGACATCATAAAGGAAAATTTAGGTCTTTCAGAAAATGAT
CAAAAAATATTTTTTAATAAAATCAATGTAATAATTCATGCAGCAGCAACAATATATTTC
AACGATCCATTAAAAGTTGCAATTACTGCAAATTTGATATCAGTACAAGAATTAATGAAA
TTATCGAGAAAAGTTCAAAAACTTGATTCTTTTGTATATGTTTCAACAGCTTATACAAAT
TGGTTTGAAAAAGATGTTAAAGAAATTATCTACAAGCCAAAATACGATCCTAATAAAGTC
ATTGAAATGTGTAAAACTCTAAGTGATGAAGAGTTGGAAAAGGAAATTCCATCAATTGGA
AAACATGTCAACACTTATACATTTTCTAAATCATTGGCAGAATACCTTATATTTCAAGAA
GGTAATGATTTGCCTATTGCAATCGTTCGACCATCAGTTGTTACAACAAGTAATAAAGAA
CCATTTTCTGGATGGGTTGACAATTGGGGTGGTGCAACACATTCTCTTTTCATGGCAGCA
AAAGGTGTTTTTAAATATCCTCATATGAGAAGTGATTATATATTTGACATTATTCCTTGT
GATATTACCGTCAACATGATTTTAGCTGCTTCATGGAAAGTTGGAACTGATATGAATTCA
AGAAATTCATCACCTCAAGTTTATAATTGTTCGTCAAGTTCAATCAATCCAATTTATTTT
AAAGAATTATATGAAGGATTTATTGAGAATGCTAGAAAATATCCATGCAGTGAAGTTTTA
TCGTATCCAAAAATTAAATTTTTTCGTTCACATTTACCTTCTGATTGTGCGGTTTTTGTA
TATCAAAAAATTCCAGCTTTTTTATGTGATTTTGTCTTAACACTTGCTGGCAAAAAACCA
AAATTTGTAAAAATAATTGATTTTGTATACAGCAATTACAATTCTGCCAAATGGGCAACA
ACGAATAAAATCATTTTTCATAGCGAAAATCCAGTGAGGTTAATGAACTCGATGAGTCAA
AAAGATTTGCAAGAATTCGATTTTGATGTTAGAAAAATATCCTGGTCAAAATTTATTGAA
AATTCTTACTTTGGAGTACGAAAGTTTATGGGCAAAGAAAAATCAGATAATTTTCCTGTT
CTAAGAAAGAAAATTCAAAGAATTAAATACGTTCAATACATTGCAACTGGCTCGTTGATT
GTTGGATCAATGTTTCTTCTGAATAAAACTCAAATTTTTAGGTCAAATAAAGAAAGTTAA
>g2345.t1 Gene=g2345 Length=499
MSKQISISEFYSNKCVFITGGTGFIGKIIVEKLLRSCPEVDTIYLLARQKKNKKASERIQ
EITNSPLFDVVRKNNSEAFQKICLMEGDIIKENLGLSENDQKIFFNKINVIIHAAATIYF
NDPLKVAITANLISVQELMKLSRKVQKLDSFVYVSTAYTNWFEKDVKEIIYKPKYDPNKV
IEMCKTLSDEELEKEIPSIGKHVNTYTFSKSLAEYLIFQEGNDLPIAIVRPSVVTTSNKE
PFSGWVDNWGGATHSLFMAAKGVFKYPHMRSDYIFDIIPCDITVNMILAASWKVGTDMNS
RNSSPQVYNCSSSSINPIYFKELYEGFIENARKYPCSEVLSYPKIKFFRSHLPSDCAVFV
YQKIPAFLCDFVLTLAGKKPKFVKIIDFVYSNYNSAKWATTNKIIFHSENPVRLMNSMSQ
KDLQEFDFDVRKISWSKFIENSYFGVRKFMGKEKSDNFPVLRKKIQRIKYVQYIATGSLI
VGSMFLLNKTQIFRSNKES
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g2345.t1 | CDD | cd05236 | FAR-N_SDR_e | 14 | 335 | 7.89957E-123 |
| 12 | g2345.t1 | CDD | cd09071 | FAR_C | 360 | 450 | 6.187E-20 |
| 7 | g2345.t1 | Gene3D | G3DSA:3.40.50.720 | - | 4 | 353 | 6.6E-70 |
| 3 | g2345.t1 | PANTHER | PTHR11011:SF60 | FATTY ACYL-COA REDUCTASE 2 | 5 | 487 | 5.7E-139 |
| 4 | g2345.t1 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 5 | 487 | 5.7E-139 |
| 1 | g2345.t1 | Pfam | PF07993 | Male sterility protein | 18 | 287 | 1.4E-67 |
| 2 | g2345.t1 | Pfam | PF03015 | Male sterility protein | 361 | 453 | 3.4E-22 |
| 9 | g2345.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 469 | - |
| 10 | g2345.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 470 | 487 | - |
| 8 | g2345.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 488 | 499 | - |
| 6 | g2345.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 6 | 293 | 3.97E-29 |
| 5 | g2345.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 470 | 487 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed