Gene loci information

Transcript annotation

  • This transcript has been annotated as ADP-ribosylation factor-like protein 8.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2351 g2351.t14 isoform g2351.t14 17107669 17109834
chr_3 g2351 g2351.t14 exon g2351.t14.exon1 17107669 17108588
chr_3 g2351 g2351.t14 TTS g2351.t14 17107674 17107674
chr_3 g2351 g2351.t14 cds g2351.t14.CDS1 17108523 17108588
chr_3 g2351 g2351.t14 exon g2351.t14.exon2 17108719 17108818
chr_3 g2351 g2351.t14 cds g2351.t14.CDS2 17108719 17108818
chr_3 g2351 g2351.t14 exon g2351.t14.exon3 17108879 17109033
chr_3 g2351 g2351.t14 cds g2351.t14.CDS3 17108879 17109033
chr_3 g2351 g2351.t14 exon g2351.t14.exon4 17109569 17109597
chr_3 g2351 g2351.t14 cds g2351.t14.CDS4 17109569 17109597
chr_3 g2351 g2351.t14 exon g2351.t14.exon5 17109660 17109695
chr_3 g2351 g2351.t14 cds g2351.t14.CDS5 17109660 17109695
chr_3 g2351 g2351.t14 exon g2351.t14.exon6 17109777 17109834
chr_3 g2351 g2351.t14 cds g2351.t14.CDS6 17109777 17109834
chr_3 g2351 g2351.t14 TSS g2351.t14 17109915 17109915

Sequences

>g2351.t14 Gene=g2351 Length=1298
ATGTTTGCTATAATAAATAAGATTCTGGATTGGTTCAAATCTCTCTTTTGGAAAGAAGAA
ATGGAATTAACATTAGTTGGCTTACAATATAGTGGGAAAACTACATTTGTCAACGTTATT
GCTTCTGGTAACTTTAGCGAAGATATGATTCCTACTGTTGGCTTTAACATGAGAAAAGTT
ACAAAAGGAAATGTTACAATCAAAGTATGGGATATTGGTGGACAGCCGAGATTTCGATCT
ATGTGGGAACGTTATTGTAGGGGTGTAAATGCAATTGTTTATATGGTTGATGCTGCAGAC
TTAGATAAAATGGAAGCTTCAAGAAACGAGCTTCATTCGTTACTTGATAAGCCGCAATTA
GCTGGTATTCCAGTATTACCATTCAAGATAGAGAGATTTGCTGTTATAGCATTTCATGCA
AAGAAAAAGATAACATCGATATAACACTTCAGTGGTTAATTGCCCATTCAAAAAGTCAAG
CCAATCGTTAAGCAAAAAATAATAGAATAATTTTAATCGCTTCTTGATACTGTTTTCTTC
AAATAAGTCAAATATAATAATTTTATGTATTTTTTTTTTGTTGTCTGTCCAACCGTTTTA
TCCGTATAATTCAGTCACTTTGTGTATCGCAAACCTTAATCTAATAAATACCATTCATTG
TTTTCTACAAATAAATATAGTGACGCATAAAAAAATATTTCATATCAAAATTAAAATTCT
GGAAATCTCAACGCAACATTAAAAATAACAAATAATCACACAATATTCAAATTATTAACA
TAATCCTTTGATTCACATGAACTAGATCTTTTTTTTTCTAAATACTTTACTAATATACTT
ATTTTTTTATTATCATACCTACATCAATGTTAAAATTCAGTTATTTTTATATTTTGTGAT
AATTTATTCGAAATCTTTAAAATGATTAAAGTCTTATGCTCATCATGAGTATTGAGACAA
TGTATATGCAAAAAAAATATTCGTAAAGGTTCATAAAATTTTTATTCTTATTATAAAATC
GACTACCTATGTTAAGGAATTTCATGAGAAACAATATTAACAAATAATTTTTAATTTTAT
TAATCTAACTATTATAAATATATTATATAGCAGTTGTTCTTGACGTTTGATTCACATGAT
GATGATGAATAAAAAAAAGAAGACTACAGATAGTTAGTTAAAGCTTCTTTTGTATTAAGG
GAAAATGATGAAACAAATAAGAAAATATGATAATATTGAAAATCTAGAGAAACAAAAAAA
GAGCTGAATAAAAAGTTTGCTTTCTGATTAAAGAAAAA

>g2351.t14 Gene=g2351 Length=147
MFAIINKILDWFKSLFWKEEMELTLVGLQYSGKTTFVNVIASGNFSEDMIPTVGFNMRKV
TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADLDKMEASRNELHSLLDKPQL
AGIPVLPFKIERFAVIAFHAKKKITSI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g2351.t14 CDD cd04159 Arl10_like 22 145 0.0000000
7 g2351.t14 Gene3D G3DSA:3.40.50.300 - 1 128 0.0000000
2 g2351.t14 PANTHER PTHR45732:SF16 - 1 140 0.0000000
3 g2351.t14 PANTHER PTHR45732 ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8 1 140 0.0000000
4 g2351.t14 PRINTS PR00328 GTP-binding SAR1 protein signature 22 45 0.0000015
5 g2351.t14 PRINTS PR00328 GTP-binding SAR1 protein signature 78 103 0.0000015
1 g2351.t14 Pfam PF00025 ADP-ribosylation factor family 12 126 0.0000000
11 g2351.t14 ProSiteProfiles PS51417 small GTPase Arf family profile. 14 147 15.7650000
9 g2351.t14 SMART SM00177 arf_sub_2 1 147 0.0000300
6 g2351.t14 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 16 128 0.0000000
10 g2351.t14 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 20 109 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005525 GTP binding MF
GO:0015031 protein transport BP
GO:0003924 GTPase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed