Gene loci information

Transcript annotation

  • This transcript has been annotated as ADP-ribosylation factor-like protein 8.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2351 g2351.t19 TTS g2351.t19 17107674 17107674
chr_3 g2351 g2351.t19 isoform g2351.t19 17108476 17109834
chr_3 g2351 g2351.t19 exon g2351.t19.exon1 17108476 17108599
chr_3 g2351 g2351.t19 cds g2351.t19.CDS1 17108476 17108599
chr_3 g2351 g2351.t19 exon g2351.t19.exon2 17108657 17108818
chr_3 g2351 g2351.t19 cds g2351.t19.CDS2 17108657 17108818
chr_3 g2351 g2351.t19 exon g2351.t19.exon3 17108879 17109033
chr_3 g2351 g2351.t19 cds g2351.t19.CDS3 17108879 17109012
chr_3 g2351 g2351.t19 exon g2351.t19.exon4 17109634 17109834
chr_3 g2351 g2351.t19 TSS g2351.t19 17109915 17109915

Sequences

>g2351.t19 Gene=g2351 Length=642
ATGTTTGCTATAATAAATAAGATTCTGGATTGGTTCAAATCTCTCTTTTGGAAAGAAGGT
AGTTACCTAATTAGAATTTAAGCATTGAAACGATGAAATATTAAATGAAATTCCTTATCT
CTTATGATTATAAAATTAGAAATGGAATTAACATTAGTTGGCTTACAATATAGTGGTAAG
TTTAAATTACTTTAAATGACTTCTGGTAACTTTAGCGAAGATATGATTCCTACTGTTGGC
TTTAACATGAGAAAAGTTACAAAAGGAAATGTTACAATCAAAGTATGGGATATTGGTGGA
CAGCCGAGATTTCGATCTATGTGGGAACGTTATTGTAGGGGTGTAAATGCAATTGTTTAT
ATGGTTGATGCTGCAGACTTAGATAAAATGGAAGCTTCAAGAAACGAGCTTCATTCGTTA
CTTGATAAGCCGCAATTAGCTGGTATTCCAGTATTAGTACTCGGAAACAAACGAGATTTA
CCAGGTGCTCTTGAAGAGACAGGTCTAATTGAACGAATGAATTTGTCAGCCATTCAAGAT
AGAGAGATTTGCTGTTATAGCATTTCATGCAAAGAAAAAGATAACATCGATATAACACTT
CAGTGGTTAATTGCCCATTCAAAAAGTCAAGCCAATCGTTAA

>g2351.t19 Gene=g2351 Length=139
MIPTVGFNMRKVTKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADLDKMEASR
NELHSLLDKPQLAGIPVLVLGNKRDLPGALEETGLIERMNLSAIQDREICCYSISCKEKD
NIDITLQWLIAHSKSQANR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g2351.t19 CDD cd04159 Arl10_like 1 132 0.000
8 g2351.t19 Gene3D G3DSA:3.40.50.300 - 1 132 0.000
2 g2351.t19 PANTHER PTHR45732:SF16 - 1 136 0.000
3 g2351.t19 PANTHER PTHR45732 ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8 1 136 0.000
5 g2351.t19 PRINTS PR00328 GTP-binding SAR1 protein signature 3 27 0.000
6 g2351.t19 PRINTS PR00328 GTP-binding SAR1 protein signature 30 55 0.000
4 g2351.t19 PRINTS PR00328 GTP-binding SAR1 protein signature 75 96 0.000
1 g2351.t19 Pfam PF00025 ADP-ribosylation factor family 1 131 0.000
11 g2351.t19 ProSiteProfiles PS51417 small GTPase Arf family profile. 1 133 17.184
10 g2351.t19 SMART SM00177 arf_sub_2 1 137 0.000
7 g2351.t19 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 2 133 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005525 GTP binding MF
GO:0015031 protein transport BP
GO:0003924 GTPase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed