General information for g2351.t21
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as ADP-ribosylation factor-like protein 8.
Parent gene
- The parent gene g2351 is located on chr_3: 17108476..17109834 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2351 | g2351.t21 | TTS | g2351.t21 | 17107674 | 17107674 |
| chr_3 | g2351 | g2351.t21 | isoform | g2351.t21 | 17108476 | 17109834 |
| chr_3 | g2351 | g2351.t21 | exon | g2351.t21.exon1 | 17108476 | 17108599 |
| chr_3 | g2351 | g2351.t21 | cds | g2351.t21.CDS1 | 17108476 | 17108599 |
| chr_3 | g2351 | g2351.t21 | exon | g2351.t21.exon2 | 17108657 | 17108818 |
| chr_3 | g2351 | g2351.t21 | cds | g2351.t21.CDS2 | 17108657 | 17108818 |
| chr_3 | g2351 | g2351.t21 | exon | g2351.t21.exon3 | 17108879 | 17109033 |
| chr_3 | g2351 | g2351.t21 | cds | g2351.t21.CDS3 | 17108879 | 17109012 |
| chr_3 | g2351 | g2351.t21 | exon | g2351.t21.exon4 | 17109660 | 17109834 |
| chr_3 | g2351 | g2351.t21 | TSS | g2351.t21 | 17109915 | 17109915 |
Sequences
>g2351.t21 Gene=g2351 Length=616
ATGTTTGCTATAATAAATAAGATTCTGGATTGGTTCAAATCTCTCTTTTGGAAAGAAGGT
AGTTACCTAATTAGAATTTAAGCATTGAAACGATGAAATATTAAATGAAATTCCTTATCT
CTTATGATTATAAAATTAGAAATGGAATTAACATTAGTTGGCTTACAATATAGTGTCTGG
TAACTTTAGCGAAGATATGATTCCTACTGTTGGCTTTAACATGAGAAAAGTTACAAAAGG
AAATGTTACAATCAAAGTATGGGATATTGGTGGACAGCCGAGATTTCGATCTATGTGGGA
ACGTTATTGTAGGGGTGTAAATGCAATTGTTTATATGGTTGATGCTGCAGACTTAGATAA
AATGGAAGCTTCAAGAAACGAGCTTCATTCGTTACTTGATAAGCCGCAATTAGCTGGTAT
TCCAGTATTAGTACTCGGAAACAAACGAGATTTACCAGGTGCTCTTGAAGAGACAGGTCT
AATTGAACGAATGAATTTGTCAGCCATTCAAGATAGAGAGATTTGCTGTTATAGCATTTC
ATGCAAAGAAAAAGATAACATCGATATAACACTTCAGTGGTTAATTGCCCATTCAAAAAG
TCAAGCCAATCGTTAA
>g2351.t21 Gene=g2351 Length=139
MIPTVGFNMRKVTKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADLDKMEASR
NELHSLLDKPQLAGIPVLVLGNKRDLPGALEETGLIERMNLSAIQDREICCYSISCKEKD
NIDITLQWLIAHSKSQANR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g2351.t21 | CDD | cd04159 | Arl10_like | 1 | 132 | 0.000 |
| 8 | g2351.t21 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 132 | 0.000 |
| 2 | g2351.t21 | PANTHER | PTHR45732:SF16 | - | 1 | 136 | 0.000 |
| 3 | g2351.t21 | PANTHER | PTHR45732 | ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8 | 1 | 136 | 0.000 |
| 5 | g2351.t21 | PRINTS | PR00328 | GTP-binding SAR1 protein signature | 3 | 27 | 0.000 |
| 6 | g2351.t21 | PRINTS | PR00328 | GTP-binding SAR1 protein signature | 30 | 55 | 0.000 |
| 4 | g2351.t21 | PRINTS | PR00328 | GTP-binding SAR1 protein signature | 75 | 96 | 0.000 |
| 1 | g2351.t21 | Pfam | PF00025 | ADP-ribosylation factor family | 1 | 131 | 0.000 |
| 11 | g2351.t21 | ProSiteProfiles | PS51417 | small GTPase Arf family profile. | 1 | 133 | 17.184 |
| 10 | g2351.t21 | SMART | SM00177 | arf_sub_2 | 1 | 137 | 0.000 |
| 7 | g2351.t21 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2 | 133 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005525 | GTP binding | MF |
| GO:0015031 | protein transport | BP |
| GO:0003924 | GTPase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
