General information for g2351.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as ADP-ribosylation factor-like protein 8.
Parent gene
- The parent gene g2351 is located on chr_3: 17108476..17109834 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2351 | g2351.t3 | isoform | g2351.t3 | 17107179 | 17109834 |
| chr_3 | g2351 | g2351.t3 | exon | g2351.t3.exon1 | 17107179 | 17107184 |
| chr_3 | g2351 | g2351.t3 | exon | g2351.t3.exon2 | 17107664 | 17108599 |
| chr_3 | g2351 | g2351.t3 | cds | g2351.t3.CDS1 | 17108476 | 17108599 |
| chr_3 | g2351 | g2351.t3 | exon | g2351.t3.exon3 | 17108657 | 17108818 |
| chr_3 | g2351 | g2351.t3 | cds | g2351.t3.CDS2 | 17108657 | 17108818 |
| chr_3 | g2351 | g2351.t3 | exon | g2351.t3.exon4 | 17108879 | 17109033 |
| chr_3 | g2351 | g2351.t3 | cds | g2351.t3.CDS3 | 17108879 | 17109033 |
| chr_3 | g2351 | g2351.t3 | exon | g2351.t3.exon5 | 17109569 | 17109597 |
| chr_3 | g2351 | g2351.t3 | cds | g2351.t3.CDS4 | 17109569 | 17109597 |
| chr_3 | g2351 | g2351.t3 | exon | g2351.t3.exon6 | 17109660 | 17109695 |
| chr_3 | g2351 | g2351.t3 | cds | g2351.t3.CDS5 | 17109660 | 17109695 |
| chr_3 | g2351 | g2351.t3 | exon | g2351.t3.exon7 | 17109777 | 17109834 |
| chr_3 | g2351 | g2351.t3 | cds | g2351.t3.CDS6 | 17109777 | 17109834 |
| chr_3 | g2351 | g2351.t3 | TSS | g2351.t3 | 17109915 | 17109915 |
| chr_3 | g2351 | g2351.t3 | TTS | g2351.t3 | NA | NA |
Sequences
>g2351.t3 Gene=g2351 Length=1382
ATGTTTGCTATAATAAATAAGATTCTGGATTGGTTCAAATCTCTCTTTTGGAAAGAAGAA
ATGGAATTAACATTAGTTGGCTTACAATATAGTGGGAAAACTACATTTGTCAACGTTATT
GCTTCTGGTAACTTTAGCGAAGATATGATTCCTACTGTTGGCTTTAACATGAGAAAAGTT
ACAAAAGGAAATGTTACAATCAAAGTATGGGATATTGGTGGACAGCCGAGATTTCGATCT
ATGTGGGAACGTTATTGTAGGGGTGTAAATGCAATTGTTTATATGGTTGATGCTGCAGAC
TTAGATAAAATGGAAGCTTCAAGAAACGAGCTTCATTCGTTACTTGATAAGCCGCAATTA
GCTGGTATTCCAGTATTAGTACTCGGAAACAAACGAGATTTACCAGGTGCTCTTGAAGAG
ACAGGTCTAATTGAACGAATGAATTTGTCAGCCATTCAAGATAGAGAGATTTGCTGTTAT
AGCATTTCATGCAAAGAAAAAGATAACATCGATATAACACTTCAGTGGTTAATTGCCCAT
TCAAAAAGTCAAGCCAATCGTTAAGCAAAAAATAATAGAATAATTTTAATCGCTTCTTGA
TACTGTTTTCTTCAAATAAGTCAAATATAATAATTTTATGTATTTTTTTTTTGTTGTCTG
TCCAACCGTTTTATCCGTATAATTCAGTCACTTTGTGTATCGCAAACCTTAATCTAATAA
ATACCATTCATTGTTTTCTACAAATAAATATAGTGACGCATAAAAAAATATTTCATATCA
AAATTAAAATTCTGGAAATCTCAACGCAACATTAAAAATAACAAATAATCACACAATATT
CAAATTATTAACATAATCCTTTGATTCACATGAACTAGATCTTTTTTTTTCTAAATACTT
TACTAATATACTTATTTTTTTATTATCATACCTACATCAATGTTAAAATTCAGTTATTTT
TATATTTTGTGATAATTTATTCGAAATCTTTAAAATGATTAAAGTCTTATGCTCATCATG
AGTATTGAGACAATGTATATGCAAAAAAAATATTCGTAAAGGTTCATAAAATTTTTATTC
TTATTATAAAATCGACTACCTATGTTAAGGAATTTCATGAGAAACAATATTAACAAATAA
TTTTTAATTTTATTAATCTAACTATTATAAATATATTATATAGCAGTTGTTCTTGACGTT
TGATTCACATGATGATGATGAATAAAAAAAAGAAGACTACAGATAGTTAGTTAAAGCTTC
TTTTGTATTAAGGGAAAATGATGAAACAAATAAGAAAATATGATAATATTGAAAATCTAG
AGAAACAAAAAAAGAGCTGAATAAAAAGTTTGCTTTCTGATTAAAGAAAAATTAAATCAA
AA
>g2351.t3 Gene=g2351 Length=187
MFAIINKILDWFKSLFWKEEMELTLVGLQYSGKTTFVNVIASGNFSEDMIPTVGFNMRKV
TKGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADLDKMEASRNELHSLLDKPQL
AGIPVLVLGNKRDLPGALEETGLIERMNLSAIQDREICCYSISCKEKDNIDITLQWLIAH
SKSQANR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g2351.t3 | CDD | cd04159 | Arl10_like | 22 | 180 | 0.000000 |
| 8 | g2351.t3 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 182 | 0.000000 |
| 2 | g2351.t3 | PANTHER | PTHR45732:SF16 | - | 1 | 184 | 0.000000 |
| 3 | g2351.t3 | PANTHER | PTHR45732 | ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8 | 1 | 184 | 0.000000 |
| 4 | g2351.t3 | PRINTS | PR00328 | GTP-binding SAR1 protein signature | 22 | 45 | 0.000000 |
| 5 | g2351.t3 | PRINTS | PR00328 | GTP-binding SAR1 protein signature | 78 | 103 | 0.000000 |
| 6 | g2351.t3 | PRINTS | PR00328 | GTP-binding SAR1 protein signature | 123 | 144 | 0.000000 |
| 1 | g2351.t3 | Pfam | PF00025 | ADP-ribosylation factor family | 12 | 179 | 0.000000 |
| 14 | g2351.t3 | ProSiteProfiles | PS51417 | small GTPase Arf family profile. | 14 | 181 | 21.943000 |
| 10 | g2351.t3 | SMART | SM00177 | arf_sub_2 | 1 | 185 | 0.000000 |
| 12 | g2351.t3 | SMART | SM00178 | sar_sub_1 | 9 | 181 | 0.000000 |
| 11 | g2351.t3 | SMART | SM00175 | rab_sub_5 | 21 | 184 | 0.000022 |
| 7 | g2351.t3 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 17 | 181 | 0.000000 |
| 13 | g2351.t3 | TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 20 | 147 | 0.000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005525 | GTP binding | MF |
| GO:0015031 | protein transport | BP |
| GO:0003924 | GTPase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K07955 (ADP-ribosylation factor-like protein 8)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
