Gene loci information

Transcript annotation

  • This transcript has been annotated as ADP-ribosylation factor-like protein 8.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2351 g2351.t9 isoform g2351.t9 17107664 17109834
chr_3 g2351 g2351.t9 exon g2351.t9.exon1 17107664 17108599
chr_3 g2351 g2351.t9 TTS g2351.t9 17107674 17107674
chr_3 g2351 g2351.t9 cds g2351.t9.CDS1 17108476 17108599
chr_3 g2351 g2351.t9 exon g2351.t9.exon2 17108657 17108818
chr_3 g2351 g2351.t9 cds g2351.t9.CDS2 17108657 17108818
chr_3 g2351 g2351.t9 exon g2351.t9.exon3 17108879 17109033
chr_3 g2351 g2351.t9 cds g2351.t9.CDS3 17108879 17109033
chr_3 g2351 g2351.t9 exon g2351.t9.exon4 17109569 17109597
chr_3 g2351 g2351.t9 cds g2351.t9.CDS4 17109569 17109597
chr_3 g2351 g2351.t9 exon g2351.t9.exon5 17109660 17109834
chr_3 g2351 g2351.t9 cds g2351.t9.CDS5 17109660 17109693
chr_3 g2351 g2351.t9 TSS g2351.t9 17109915 17109915

Sequences

>g2351.t9 Gene=g2351 Length=1457
ATGTTTGCTATAATAAATAAGATTCTGGATTGGTTCAAATCTCTCTTTTGGAAAGAAGGT
AGTTACCTAATTAGAATTTAAGCATTGAAACGATGAAATATTAAATGAAATTCCTTATCT
CTTATGATTATAAAATTAGAAATGGAATTAACATTAGTTGGCTTACAATATAGTGGGAAA
ACTACATTTGTCAACGTTATTGCTTCTGGTAACTTTAGCGAAGATATGATTCCTACTGTT
GGCTTTAACATGAGAAAAGTTACAAAAGGAAATGTTACAATCAAAGTATGGGATATTGGT
GGACAGCCGAGATTTCGATCTATGTGGGAACGTTATTGTAGGGGTGTAAATGCAATTGTT
TATATGGTTGATGCTGCAGACTTAGATAAAATGGAAGCTTCAAGAAACGAGCTTCATTCG
TTACTTGATAAGCCGCAATTAGCTGGTATTCCAGTATTAGTACTCGGAAACAAACGAGAT
TTACCAGGTGCTCTTGAAGAGACAGGTCTAATTGAACGAATGAATTTGTCAGCCATTCAA
GATAGAGAGATTTGCTGTTATAGCATTTCATGCAAAGAAAAAGATAACATCGATATAACA
CTTCAGTGGTTAATTGCCCATTCAAAAAGTCAAGCCAATCGTTAAGCAAAAAATAATAGA
ATAATTTTAATCGCTTCTTGATACTGTTTTCTTCAAATAAGTCAAATATAATAATTTTAT
GTATTTTTTTTTTGTTGTCTGTCCAACCGTTTTATCCGTATAATTCAGTCACTTTGTGTA
TCGCAAACCTTAATCTAATAAATACCATTCATTGTTTTCTACAAATAAATATAGTGACGC
ATAAAAAAATATTTCATATCAAAATTAAAATTCTGGAAATCTCAACGCAACATTAAAAAT
AACAAATAATCACACAATATTCAAATTATTAACATAATCCTTTGATTCACATGAACTAGA
TCTTTTTTTTTCTAAATACTTTACTAATATACTTATTTTTTTATTATCATACCTACATCA
ATGTTAAAATTCAGTTATTTTTATATTTTGTGATAATTTATTCGAAATCTTTAAAATGAT
TAAAGTCTTATGCTCATCATGAGTATTGAGACAATGTATATGCAAAAAAAATATTCGTAA
AGGTTCATAAAATTTTTATTCTTATTATAAAATCGACTACCTATGTTAAGGAATTTCATG
AGAAACAATATTAACAAATAATTTTTAATTTTATTAATCTAACTATTATAAATATATTAT
ATAGCAGTTGTTCTTGACGTTTGATTCACATGATGATGATGAATAAAAAAAAGAAGACTA
CAGATAGTTAGTTAAAGCTTCTTTTGTATTAAGGGAAAATGATGAAACAAATAAGAAAAT
ATGATAATATTGAAAATCTAGAGAAACAAAAAAAGAGCTGAATAAAAAGTTTGCTTTCTG
ATTAAAGAAAAATTAAA

>g2351.t9 Gene=g2351 Length=167
MELTLVGLQYSGKTTFVNVIASGNFSEDMIPTVGFNMRKVTKGNVTIKVWDIGGQPRFRS
MWERYCRGVNAIVYMVDAADLDKMEASRNELHSLLDKPQLAGIPVLVLGNKRDLPGALEE
TGLIERMNLSAIQDREICCYSISCKEKDNIDITLQWLIAHSKSQANR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g2351.t9 CDD cd04159 Arl10_like 2 160 0.0000000
8 g2351.t9 Gene3D G3DSA:3.40.50.300 - 1 162 0.0000000
2 g2351.t9 PANTHER PTHR45732:SF16 - 1 164 0.0000000
3 g2351.t9 PANTHER PTHR45732 ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8 1 164 0.0000000
6 g2351.t9 PRINTS PR00328 GTP-binding SAR1 protein signature 2 25 0.0000000
4 g2351.t9 PRINTS PR00328 GTP-binding SAR1 protein signature 58 83 0.0000000
5 g2351.t9 PRINTS PR00328 GTP-binding SAR1 protein signature 103 124 0.0000000
1 g2351.t9 Pfam PF00025 ADP-ribosylation factor family 3 159 0.0000000
14 g2351.t9 ProSiteProfiles PS51417 small GTPase Arf family profile. 1 161 20.7940000
10 g2351.t9 SMART SM00177 arf_sub_2 1 165 0.0000000
11 g2351.t9 SMART SM00175 rab_sub_5 1 164 0.0000220
12 g2351.t9 SMART SM00178 sar_sub_1 1 161 0.0000002
7 g2351.t9 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 3 161 0.0000000
13 g2351.t9 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 2 128 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005525 GTP binding MF
GO:0015031 protein transport BP
GO:0003924 GTPase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values