Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative ATP synthase subunit d, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g2383 g2383.t2 TSS g2383.t2 17486241 17486241
chr_3 g2383 g2383.t2 isoform g2383.t2 17486309 17486923
chr_3 g2383 g2383.t2 exon g2383.t2.exon1 17486309 17486434
chr_3 g2383 g2383.t2 exon g2383.t2.exon2 17486530 17486923
chr_3 g2383 g2383.t2 cds g2383.t2.CDS1 17486603 17486923
chr_3 g2383 g2383.t2 TTS g2383.t2 17487067 17487067

Sequences

>g2383.t2 Gene=g2383 Length=520
ATGGCTTCACGTCGTATTGCAGCATCTTCAATTAACTGGGCAGCAATTGCCGAACGTGTG
CCAGCAGCGCAGAGAACTAATTTTACTGCTTTCAAGTCGAAGAGCGATAAATATTTGAGA
AGGTTGTGTATTGGCTAATCCTGAAAATCCACCAAAAATCGATTGGGCTGCATACAAGAA
TTCAGTCCCAATTCCTGGAATGGTTGAAAACTTCCAGAAACAGTACGAAGCATTGAAAGT
TCCCTATCCATCAGATAATGTTAGCTCACAACTTGATCAACAAAAGCAACAAGTTGCAAA
GGAAATTGAAGAATTCAAAAGAGATTCATCAGCACGTATTGCTGAACATGAGAAGGCTGT
TGCTCATTTGAAATCATTGCTGCCATACGCTGCTATGACCATGGAAGATTTCAATGATGC
CTTCCCAGACCAGGCACTTGATGCAATTAATCGTCCAACATTCTGGCCTCACGATGCTGC
TGAGCAAGAACCAAGAAAAGAACCAGAAGAACATCATTAA

>g2383.t2 Gene=g2383 Length=106
MVENFQKQYEALKVPYPSDNVSSQLDQQKQQVAKEIEEFKRDSSARIAEHEKAVAHLKSL
LPYAAMTMEDFNDAFPDQALDAINRPTFWPHDAAEQEPRKEPEEHH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g2383.t2 Coils Coil Coil 18 42 -
7 g2383.t2 Gene3D G3DSA:1.20.58.880 - 1 59 5.5E-15
5 g2383.t2 MobiDBLite mobidb-lite consensus disorder prediction 85 106 -
6 g2383.t2 MobiDBLite mobidb-lite consensus disorder prediction 92 106 -
2 g2383.t2 PANTHER PTHR12700:SF12 ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL 1 93 1.0E-22
3 g2383.t2 PANTHER PTHR12700 ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL 1 93 1.0E-22
1 g2383.t2 Pfam PF05873 ATP synthase D chain, mitochondrial (ATP5H) 1 91 2.8E-35
4 g2383.t2 SUPERFAMILY SSF161065 ATP synthase D chain-like 1 59 1.7E-13

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0015986 ATP synthesis coupled proton transport BP
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) CC
GO:0015078 proton transmembrane transporter activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed