General information for g2383.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ATP synthase subunit d, mitochondrial.
Parent gene
- The parent gene g2383 is located on chr_3: 17486528..17487084 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2383 | g2383.t4 | TSS | g2383.t4 | 17486241 | 17486241 |
| chr_3 | g2383 | g2383.t4 | isoform | g2383.t4 | 17486528 | 17487084 |
| chr_3 | g2383 | g2383.t4 | exon | g2383.t4.exon1 | 17486528 | 17487084 |
| chr_3 | g2383 | g2383.t4 | cds | g2383.t4.CDS1 | 17486603 | 17486923 |
| chr_3 | g2383 | g2383.t4 | TTS | g2383.t4 | 17487067 | 17487067 |
Sequences
>g2383.t4 Gene=g2383 Length=557
AGTGTATTGGCTAATCCTGAAAATCCACCAAAAATCGATTGGGCTGCATACAAGAATTCA
GTCCCAATTCCTGGAATGGTTGAAAACTTCCAGAAACAGTACGAAGCATTGAAAGTTCCC
TATCCATCAGATAATGTTAGCTCACAACTTGATCAACAAAAGCAACAAGTTGCAAAGGAA
ATTGAAGAATTCAAAAGAGATTCATCAGCACGTATTGCTGAACATGAGAAGGCTGTTGCT
CATTTGAAATCATTGCTGCCATACGCTGCTATGACCATGGAAGATTTCAATGATGCCTTC
CCAGACCAGGCACTTGATGCAATTAATCGTCCAACATTCTGGCCTCACGATGCTGCTGAG
CAAGAACCAAGAAAAGAACCAGAAGAACATCATTAAACAAGCTTATAAATGTGTATGATT
GATTCCAAAATAAATTGTTTTTTGGCATTCGGTAACATTAAAAGCATTCGATGCCGATTA
AATTCTGTTTTAGATTCCTAGAGCGAAAAAATTGAAGAATGAATAAAAATAATTAAAAAC
CGAAATAATGGAGAAAT
>g2383.t4 Gene=g2383 Length=106
MVENFQKQYEALKVPYPSDNVSSQLDQQKQQVAKEIEEFKRDSSARIAEHEKAVAHLKSL
LPYAAMTMEDFNDAFPDQALDAINRPTFWPHDAAEQEPRKEPEEHH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g2383.t4 | Coils | Coil | Coil | 18 | 42 | - |
| 7 | g2383.t4 | Gene3D | G3DSA:1.20.58.880 | - | 1 | 59 | 5.5E-15 |
| 5 | g2383.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 106 | - |
| 6 | g2383.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 106 | - |
| 2 | g2383.t4 | PANTHER | PTHR12700:SF12 | ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL | 1 | 93 | 1.0E-22 |
| 3 | g2383.t4 | PANTHER | PTHR12700 | ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL | 1 | 93 | 1.0E-22 |
| 1 | g2383.t4 | Pfam | PF05873 | ATP synthase D chain, mitochondrial (ATP5H) | 1 | 91 | 2.8E-35 |
| 4 | g2383.t4 | SUPERFAMILY | SSF161065 | ATP synthase D chain-like | 1 | 59 | 1.7E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0015986 | ATP synthesis coupled proton transport | BP |
| GO:0000276 | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) | CC |
| GO:0015078 | proton transmembrane transporter activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
