General information for g2404.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Dynamin-like 120 kDa protein, mitochondrial.
Parent gene
- The parent gene g2404 is located on chr_3: 17684052..17685700 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g2404 | g2404.t3 | isoform | g2404.t3 | 17684052 | 17685700 |
| chr_3 | g2404 | g2404.t3 | exon | g2404.t3.exon1 | 17684052 | 17684667 |
| chr_3 | g2404 | g2404.t3 | cds | g2404.t3.CDS1 | 17684054 | 17684667 |
| chr_3 | g2404 | g2404.t3 | exon | g2404.t3.exon2 | 17684900 | 17685043 |
| chr_3 | g2404 | g2404.t3 | cds | g2404.t3.CDS2 | 17684900 | 17685043 |
| chr_3 | g2404 | g2404.t3 | exon | g2404.t3.exon3 | 17685111 | 17685246 |
| chr_3 | g2404 | g2404.t3 | cds | g2404.t3.CDS3 | 17685111 | 17685246 |
| chr_3 | g2404 | g2404.t3 | exon | g2404.t3.exon4 | 17685304 | 17685700 |
| chr_3 | g2404 | g2404.t3 | cds | g2404.t3.CDS4 | 17685304 | 17685597 |
| chr_3 | g2404 | g2404.t3 | TSS | g2404.t3 | NA | NA |
| chr_3 | g2404 | g2404.t3 | TTS | g2404.t3 | NA | NA |
Sequences
>g2404.t3 Gene=g2404 Length=1293
ATGTCTCAAATACTCCGTCGTAATTCAAGGTAATAAGAATACTGTAAATTAAAATGAATA
AAACTTGTAAAACTATAATATTTGATTATTTAACAAATCACTCATGACTTCTTCTTCATT
TCATAGGATAAATTTTATTTATCGCTCGTTAAGACCGGTTGTCATTAATGCCACAAAATT
AAACTATTCAGTACTGAGTGGACGAAATCAATGGAATCATTATGGAAATTTGAGATATAG
ACAAAATCAATTATTTGATAACAACCTCTTGTTAAAAAATAATCCAGCAAATTTCAGAAA
TTATGGAATGCTTGTTGGTAGAATATTGAGAGGTGCATTGAAACTGAGATATTTGTTACT
TGGTGGTGCAGTTGGTGGAACAGTTACACTCAATAGTAAATATGAGCAATGGAAAGAAGG
TCTTCCTGATATGAAATGGCTTAATGAAGTCTTTCCTGATAATGACCAATGGCAAAAGTT
TTCAAATTCAGTTATCGGCATAACGGAGTCACTTAAAAATTCTATTGAACTTGATCCAAA
ATTAAAGAAATTAGGTGAGGATAAATTGATTGAATGGAGAAATTGGTTCGATAGTCGATT
AGATAACGCCATTGAAGCAACTGAAATTGAAACACAGCTAGAAAATGCCGAAAGTAATTG
CAATTTAATTCTATTTAATCTCGGAGCAGATTTGGTACAGAAATCGAAAGTCATTGCAAA
AGAAATGAGTTATGAGGAACACAAAAGGAAAAATCAGATACTTCAAAAACAAATTGATCA
GCTGCAAACTGAAATCATGAATGTTCAAATCAAATATCAAAAAGAATTAGAAAAGCTTGA
GAAAGAAAATCGTGACCTTCGACAACAGTATTTGTTAACTAAAACAAATAGAAAGATGAT
ATCTTCAAAGAAAATTAAAAAATCACTTATTGATATGTACTCTGAAGTGCTTGATGAATT
AAGCGGATATGATTCAAGTTACTCAACTGCAGACCATTTACCTCGTGTTGTTGTTGTTGG
AGATCAAAGTAGCGGAAAAACCTCTGTTCTCGAATCAATAGCACAAGCAAGAATATTTCC
TCGTGGAAGTGGTGAAATGATGACAAGAGCACCAGTAAAAGTGACACTCTCAGAAGGTCC
ATATCATGTCGCCGCTTTTCGTGATTCAAATCGAGAATTTGATTTGACTAAAGAAAGTGA
TTTAGCTGAACTCAGACGTGAAGTTGAAATTCGAATGAGAAATTCAGTTCGTGGTGGAAA
AACTGTGAGCAATGAAGTCATTTCGATGACTGT
>g2404.t3 Gene=g2404 Length=396
MTSSSFHRINFIYRSLRPVVINATKLNYSVLSGRNQWNHYGNLRYRQNQLFDNNLLLKNN
PANFRNYGMLVGRILRGALKLRYLLLGGAVGGTVTLNSKYEQWKEGLPDMKWLNEVFPDN
DQWQKFSNSVIGITESLKNSIELDPKLKKLGEDKLIEWRNWFDSRLDNAIEATEIETQLE
NAESNCNLILFNLGADLVQKSKVIAKEMSYEEHKRKNQILQKQIDQLQTEIMNVQIKYQK
ELEKLEKENRDLRQQYLLTKTNRKMISSKKIKKSLIDMYSEVLDELSGYDSSYSTADHLP
RVVVVGDQSSGKTSVLESIAQARIFPRGSGEMMTRAPVKVTLSEGPYHVAAFRDSNREFD
LTKESDLAELRREVEIRMRNSVRGGKTVSNEVISMT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g2404.t3 | Coils | Coil | Coil | 210 | 262 | - |
| 7 | g2404.t3 | Gene3D | G3DSA:3.40.50.300 | - | 272 | 396 | 3.2E-27 |
| 2 | g2404.t3 | PANTHER | PTHR11566 | DYNAMIN | 218 | 396 | 6.0E-68 |
| 3 | g2404.t3 | PANTHER | PTHR11566:SF67 | DYNAMIN-LIKE 120 KDA PROTEIN, MITOCHONDRIAL | 218 | 396 | 6.0E-68 |
| 5 | g2404.t3 | PRINTS | PR00195 | Dynamin signature | 299 | 317 | 2.1E-7 |
| 4 | g2404.t3 | PRINTS | PR00195 | Dynamin signature | 324 | 341 | 2.1E-7 |
| 1 | g2404.t3 | Pfam | PF00350 | Dynamin family | 302 | 395 | 1.4E-18 |
| 9 | g2404.t3 | ProSiteProfiles | PS51718 | Dynamin-type guanine nucleotide-binding (G) domain profile. | 296 | 396 | 28.93 |
| 6 | g2404.t3 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 275 | 394 | 1.81E-17 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005739 | mitochondrion | CC |
| GO:0005525 | GTP binding | MF |
| GO:0007005 | mitochondrion organization | BP |
| GO:0006915 | apoptotic process | BP |
| GO:0003924 | GTPase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed